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authorRoel Janssen2016-03-01 13:24:13 +0100
committerRoel Janssen2016-03-01 13:24:13 +0100
commit1719e1f64e7532460de82afb3df391439eb87fb0 (patch)
tree314d9524e51766181fe611b276c7892567dc3770 /gn/packages/python.scm
parent3d81b81500bca24e46bf83eb9750bdec19dd6862 (diff)
parentc9c9ff5f70e0fbb08c6b15d9cfc7a541b34cc818 (diff)
downloadguix-bioinformatics-1719e1f64e7532460de82afb3df391439eb87fb0.tar.gz
Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics
Diffstat (limited to 'gn/packages/python.scm')
-rw-r--r--gn/packages/python.scm99
1 files changed, 78 insertions, 21 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 8f2bc80..7781521 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -357,32 +357,89 @@ project)")
(description #f)
(license #f)))
-(define-public python2-piddle
+(define-public python2-pil-1.1.6
(package
- (name "python2-piddle")
- (version "1.0.15")
+ (name "python2-pil")
+ (version "1.1.6")
(source
- (origin
- (method url-fetch)
- (uri (string-append
- ;; http://sourceforge.net/projects/numpy/files/Old%20Numarray/1.5.2/numarray-1.5.2.tar.gz/download
- "mirror://sourceforge/piddle/piddle-" version ".zip"
- ))
- ;; (file-name (string-append name "-" version ".zip"))
- (sha256
- (base32
- "0jaxfsrcgqb5cf2wznxnpdws5khlrdixmg85lrhq2zl9cy6dfdya"))))
- (native-inputs
- `(("unzip" ,unzip)))
-
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://effbot.org/downloads/Imaging-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "141zidl3s9v4vfi3nsbg42iq1lc2a932gprqr1kij5hrnn53bmvx"))
+ (modules '((guix build utils)))
+ (snippet
+ ;; Adapt to newer freetype. As the package is unmaintained upstream,
+ ;; there is no use in creating a patch and reporting it.
+ '(substitute* "_imagingft.c"
+ (("freetype/")
+ "freetype2/")))))
(build-system python-build-system)
- ;; (native-inputs
- ;; `(("python-setuptools" ,python-setuptools)))
+ (inputs
+ `(("freetype" ,freetype)
+ ("libjpeg" ,libjpeg)
+ ("libtiff" ,libtiff)
+ ("python-setuptools" ,python-setuptools)
+ ("zlib" ,zlib)))
(arguments
+ ;; Only the fork python-pillow works with Python 3.
`(#:python ,python-2
- #:tests? #f
- )) ; no 'setup.py test' really!
- (home-page "http://www.numpy.org/")
+ #:tests? #f ; no check target
+ #:phases
+ (alist-cons-before
+ 'build 'configure
+ ;; According to README and setup.py, manual configuration is
+ ;; the preferred way of "searching" for inputs.
+ ;; lcms is not found, TCL_ROOT refers to the unavailable tkinter.
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((jpeg (assoc-ref inputs "libjpeg"))
+ (zlib (assoc-ref inputs "zlib"))
+ (tiff (assoc-ref inputs "libtiff"))
+ (freetype (assoc-ref inputs "freetype")))
+ (substitute* "setup.py"
+ (("JPEG_ROOT = None")
+ (string-append "JPEG_ROOT = libinclude(\"" jpeg "\")"))
+ (("ZLIB_ROOT = None")
+ (string-append "ZLIB_ROOT = libinclude(\"" zlib "\")"))
+ (("TIFF_ROOT = None")
+ (string-append "TIFF_ROOT = libinclude(\"" tiff "\")"))
+ (("FREETYPE_ROOT = None")
+ (string-append "FREETYPE_ROOT = libinclude(\""
+ freetype "\")")))))
+ %standard-phases)))
+ (home-page "http://www.pythonware.com/products/pil/")
+ (synopsis "Python Imaging Library")
+ (description "The Python Imaging Library (PIL) adds image processing
+capabilities to the Python interpreter.")
+ (license (license:x11-style
+ "file://README"
+ "See 'README' in the distribution."))))
+
+(define-public python2-piddle-gn
+ (package
+ (name "python2-piddle")
+ (version "1.0.15-gn")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://files.genenetwork.org/software/contrib/piddle-"
+version ".tgz"))
+ (sha256
+ (base32
+ "05gjnn31v7p0kh58qixrpcizcxqf3b7zv4a5kk8nsmqwgxh0c6gq"))))
+
+ (build-system python-build-system)
+ (native-inputs
+ `(("python2-setuptools" ,python2-setuptools)))
+ (arguments
+ `(
+ #:python ,python-2
+ #:tests? #f ; no 'setup.py test' really!
+ ))
+ (home-page #f)
(synopsis "Canvas drawing library for python2 (old!)")
(description #f)
(license #f)))