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author | Efraim Flashner | 2022-04-20 16:14:32 +0300 |
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committer | Efraim Flashner | 2022-04-20 16:15:04 +0300 |
commit | 027827b9606a41edf5c778b98639b0f015f56cc9 (patch) | |
tree | 110d3f375738e15f86e378139df37f2dc116aaba /gn/packages/python.scm | |
parent | 23cf83df7482c5e0ed185eb8532d4eacf2ad7241 (diff) | |
download | guix-bioinformatics-027827b9606a41edf5c778b98639b0f015f56cc9.tar.gz |
Remove upstreamed packages
Diffstat (limited to 'gn/packages/python.scm')
-rw-r--r-- | gn/packages/python.scm | 82 |
1 files changed, 0 insertions, 82 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index a689b1c..61c5133 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -32,28 +32,6 @@ #:use-module (guix build-system python) #:use-module (srfi srfi-1)) -(define-public python-pyvcf - (package - (name "python-pyvcf") - (version "0.6.8") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pyvcf" version)) - (sha256 - (base32 - "1ngryr12d3izmhmwplc46xhyj9i7yhrpm90xnsd2578p7m8p5n79")))) - (build-system python-build-system) - (arguments - `(#:tests? #f)) - (home-page - "https://github.com/jamescasbon/PyVCF") - (synopsis - "Variant Call Format (VCF) parser for Python") - (description - "Variant Call Format (VCF) parser for Python") - (license #f))) - (define-public python-rpy2-2.9 (package (inherit python-rpy2) @@ -1409,31 +1387,6 @@ sorted order.") "Easy to use fixtures to write regression tests.") (license license:expat))) -(define-public python-pytest-datadir - (package - (name "python-pytest-datadir") - (version "1.3.1") - (source - (origin - (method url-fetch) - (uri (pypi-uri "pytest-datadir" version)) - (sha256 - (base32 - "066bg6wlzgq2pqnjp73dfrcmk8951xw3aqcxa3p1axgqimrixbyk")))) - (build-system python-build-system) - (propagated-inputs - `(("python-pathlib2" ,python-pathlib2) - ("python-pytest" ,python-pytest))) - (inputs - `(("python-setuptools-scm" ,python-setuptools-scm))) - (home-page - "http://github.com/gabrielcnr/pytest-datadir") - (synopsis - "pytest plugin for test data directories and files") - (description - "pytest plugin for test data directories and files") - (license license:expat))) - (define-public python-pre-commit (package (name "python-pre-commit") @@ -1808,41 +1761,6 @@ The goal of the project is to parse everything in the Pip requirement file format spec.") (license license:bsd-3))) -(define-public python-pytest-pudb - ;; PyPi does not include tests - (let ((commit "a6b3d2f4d35e558d72bccff472ecde9c9d9c69e5") - (revision "0")) - (package - (name "python-pytest-pudb") - (version "0.7.0") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/wronglink/pytest-pudb") - (commit commit))) - (file-name (string-append name "-" commit)) - (sha256 - (base32 "1c0pypxx3y8w7s5bz9iy3w3aablnhn81rnhmb0is8hf2qpm6k3w0")))) - (build-system python-build-system) - (propagated-inputs (list pudb)) - (native-inputs - (list python-pytest)) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "pytest" "-v"))))))) - (home-page "https://github.com/wronglink/pytest-pudb") - (synopsis "Pytest PuDB debugger integration") - (description - "@code{python-pytest-pudb} provides PuDB debugger integration based on - pytest PDB integration.") - (license license:expat)))) - (define-public python-supervisor (package (name "python-supervisor") |