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author | Efraim Flashner | 2023-03-20 11:47:30 +0200 |
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committer | Efraim Flashner | 2023-03-20 11:47:30 +0200 |
commit | 37efc1b1366790a1df0ee45399740972140a461f (patch) | |
tree | 30466b4d2082d956cf45c27673e1c6b8351b53be /gn/packages/python.scm | |
parent | db96964f56052bd1ac18d5696f269571fe51c1bb (diff) | |
download | guix-bioinformatics-37efc1b1366790a1df0ee45399740972140a461f.tar.gz |
python-pyshexc: Update to 0.9.1.
* gn/packages/python.scm (python-pyshexc): Update to 0.9.1.
[arguments]: Update custom 'check phase.
[propagated-inputs]: Add python-chardet, python-rdflib-shim,
python-shexjsg. Remove python-rdflib, python-rdflib-jsonld,
python-requests.
[native-inputs]: Add python-pbr, python-requests. Remove python-shexjsg,
custom test-suite git checkout.
(python-shexjsg-min): Remove variable.
Diffstat (limited to 'gn/packages/python.scm')
-rw-r--r-- | gn/packages/python.scm | 63 |
1 files changed, 15 insertions, 48 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm index bb2c0b0..744d7b3 100644 --- a/gn/packages/python.scm +++ b/gn/packages/python.scm @@ -928,54 +928,34 @@ server.") (define-public python-pyshexc (package (name "python-pyshexc") - (version "0.5.4") + (version "0.9.1") (source (origin (method url-fetch) (uri (pypi-uri "PyShExC" version)) (sha256 - (base32 - "0hyhmc971gh25ja34j9hbkr7dg9n3jfin8668cqzjmcpjvb1jnil")))) + (base32 "1lq4lf0nal1v1d3vbyrr1hfkhmhphy06dyqhyw7b5zls9dfrga9m")))) (build-system python-build-system) (arguments - '(#:tests? #f ; Tests aren't included in release tarball. + '(#:tests? #f ; It isn't clear how the tests expect to succeed. #:phases (modify-phases %standard-phases (replace 'check (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (if tests? - (begin (add-installed-pythonpath inputs outputs) - (substitute* "tests/test_basic_parser.py" - (("BasicParserTestCase.repo_url.*") - (string-append "BasicParserTestCase.repo_url = \"" - (assoc-ref inputs "test-suite") - "/schemas\"\n"))) - (with-directory-excursion "tests" - (invoke "python" "build_test_harness.py") - (invoke "python" "test_basic_parser.py") - (invoke "python" "test_issue_2.py") - (invoke "python" "test_shexr.py"))) - #t)))))) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "python" "-m" "unittest" "discover" "-s" "tests"))))))) (propagated-inputs - `(("python-antlr4-python3-runtime" ,python-antlr4-python3-runtime) - ("python-jsonasobj" ,python-jsonasobj) - ("python-pyjsg" ,python-pyjsg) - ("python-rdflib" ,python-rdflib) - ("python-rdflib-jsonld" ,python-rdflib-jsonld) - ("python-requests" ,python-requests))) + (list python-antlr4-python3-runtime + python-chardet + python-jsonasobj + python-pyjsg + python-rdflib-shim + python-shexjsg)) (native-inputs - `(("python-yadict-compare" ,python-yadict-compare) - ("python-shexjsg" ,python-shexjsg-min) - ("test-suite" - ,(origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/shexSpec/shexTest") - (commit "v2.0.2"))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1x788nyrwycfr55wbg0ay6mc8mi6wwsg81h614rx9pw6rvrsppps")))))) + (list python-pbr + python-requests + python-yadict-compare)) (home-page "https://github.com/shexSpec/grammar/tree/master/parsers/python") (synopsis "Python ShExC Parser") (description "This package converts the @dfn{Shape Expression Compact} @@ -1096,19 +1076,6 @@ treats name/value pairs as first class attributes whenever possible.") ShEx 2.0 language.") (license license:cc0))) -;; Lets use this one for tests. -(define python-shexjsg-min - (package - (inherit python-shexjsg) - (name "python-shexjsg") - (arguments - (substitute-keyword-arguments (package-arguments python-shexjsg) - ((#:tests? _ #t) #f))) - (native-inputs - `(,@(alist-delete "python-pyshexc" - (package-native-inputs python-shexjsg)))) - (properties `((hidden? . #t))))) - (define-public python-yadict-compare (package (name "python-yadict-compare") |