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authorEfraim Flashner2020-04-21 04:48:44 -0500
committerEfraim Flashner2020-04-21 04:48:44 -0500
commit6d3d3b3d166d823fab62187ffe454bb167ccd8a8 (patch)
tree010dbfa8bda047221c34593dab13fad32f3e09a5 /gn/packages/python.scm
parent40b410c5cd5368910416df411764342d549bd770 (diff)
downloadguix-bioinformatics-6d3d3b3d166d823fab62187ffe454bb167ccd8a8.tar.gz
rearrange and deduplicate some packages
Diffstat (limited to 'gn/packages/python.scm')
-rw-r--r--gn/packages/python.scm75
1 files changed, 75 insertions, 0 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index c343815..46122ce 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -1134,3 +1134,78 @@ spreadsheets without the need for COM objects.")
(sha256
(base32
"1lg1klrczvzfan89y3bl9ykrknl3nb01vvai37fkww24apzyibjf"))))))
+
+(define-public python-arvados-python-client
+ (package
+ (name "python-arvados-python-client")
+ (version "2.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "arvados-python-client" version))
+ (sha256
+ (base32
+ "19l4w6m5426x5k2kick630dh2jx26j16ycs2nhbfgr4cd43d29y4"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; tests not included?
+ (propagated-inputs
+ `(("python-ciso8601" ,python-ciso8601)
+ ("python-future" ,python-future)
+ ;("python-google-api-python-client" ,python-google-api-python-client)
+ ("python-google-api-client" ,python-google-api-client)
+ ("python-httplib2" ,python-httplib2)
+ ("python-pycurl" ,python-pycurl)
+ ("python-ruamel.yaml" ,python-ruamel.yaml-0.15)
+ ("python-setuptools" ,python-setuptools)
+ ("python-ws4py" ,python-ws4py)))
+ (native-inputs
+ `(("python-mock" ,python-mock)
+ ("python-oauth2client" ,python-oauth2client)
+ ("python-pbr" ,python-pbr-1.6.0)
+ ("python-pyyaml" ,python-pyyaml)
+ ("python-uritemplate" ,python-uritemplate)))
+ (home-page "https://arvados.org")
+ (synopsis "Arvados client library")
+ (description "This package provides the arvados module, an API client for
+Arvados. It also includes higher-level functions to help you write Crunch
+scripts, and command-line tools to store and retrieve data in the Keep storage
+server.")
+ (license license:asl2.0)))
+
+(define-public python-schema-salad
+ (package
+ (name "python-schema-salad")
+ (version "5.0.20200416112825")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "schema-salad" version))
+ (sha256
+ (base32
+ "1pm6q266qrw4r0w0vnzhsvqgk5j8b3q61hxg99awhgpjsmcvkmsz"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-cachecontrol" ,python-cachecontrol-0.11)
+ ("python-lockfile" ,python-lockfile)
+ ("python-mistune" ,python-mistune)
+ ("python-rdflib" ,python-rdflib)
+ ("python-rdflib-jsonld" ,python-rdflib-jsonld)
+ ("python-requests" ,python-requests)
+ ("python-ruamel.yaml" ,python-ruamel.yaml)
+ ("python-setuptools" ,python-setuptools)
+ ("python-typing-extensions" ,python-typing-extensions)))
+ (native-inputs
+ `(("python-pytest" ,python-pytest)
+ ("python-pytest-runner" ,python-pytest-runner)))
+ (home-page "https://github.com/common-workflow-language/schema_salad")
+ (synopsis "Schema Annotations for Linked Avro Data (SALAD)")
+ (description
+ "Salad is a schema language for describing JSON or YAML structured linked
+data documents. Salad schema describes rules for preprocessing, structural
+validation, and hyperlink checking for documents described by a Salad schema.
+Salad supports rich data modeling with inheritance, template specialization,
+object identifiers, object references, documentation generation, code
+generation, and transformation to RDF. Salad provides a bridge between document
+and record oriented data modeling and the Semantic Web.")
+ (license license:asl2.0)))