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author | Efraim Flashner | 2021-09-05 00:30:57 +0300 |
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committer | Efraim Flashner | 2021-09-05 00:30:57 +0300 |
commit | b773e0e0a2869b2d370891696e0dd1382dacf9f4 (patch) | |
tree | fc6a2fa132d520ee140b2ae4f055a312c40769d1 /gn/packages/perl.scm | |
parent | 6b358542f5832376be16a165b897ea43270e2323 (diff) | |
download | guix-bioinformatics-b773e0e0a2869b2d370891696e0dd1382dacf9f4.tar.gz |
WIP braker
Diffstat (limited to 'gn/packages/perl.scm')
-rw-r--r-- | gn/packages/perl.scm | 196 |
1 files changed, 192 insertions, 4 deletions
diff --git a/gn/packages/perl.scm b/gn/packages/perl.scm index 7945b15..65f3d30 100644 --- a/gn/packages/perl.scm +++ b/gn/packages/perl.scm @@ -19,24 +19,26 @@ (define-module (gn packages perl) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) + #:use-module (gnu packages autotools) #:use-module (gnu packages compression) #:use-module (gnu packages databases) - #:use-module (gnu packages readline) - #:use-module (gnu packages autotools) #:use-module (gnu packages java) #:use-module (gnu packages libffi) + #:use-module (gnu packages perl) + #:use-module (gnu packages perl-check) #:use-module (gnu packages python) #:use-module (gnu packages ragel) + #:use-module (gnu packages readline) #:use-module (gnu packages ruby) #:use-module (gnu packages tls) + #:use-module (gnu packages xml) + #:use-module (gnu packages web) #:use-module (gnu packages version-control) #:use-module (guix packages) #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix utils) #:use-module (guix build-system gnu) - #:use-module (gnu packages xml) - #:use-module (gnu packages web) #:use-module (guix build-system perl)) (define-public perl-time-parsedate ; guix: old lib and tests failing - works though @@ -96,3 +98,189 @@ (synopsis "Pjotr's time logger") (description "None") (license license:gpl2+)))) + +(define-public perl-mce + (package + (name "perl-mce") + (version "1.874") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/M/MA/MARIOROY/MCE-" + version + ".tar.gz")) + (sha256 + (base32 + "1l6khsmwzfr88xb81kdvmdskxgz3pm4yz2ybxkbml4bmhh0y62fq")))) + (build-system perl-build-system) + (propagated-inputs + `(("perl-sereal-decoder" ,perl-sereal-decoder) + ("perl-sereal-encoder" ,perl-sereal-encoder))) + (home-page "https://metacpan.org/release/MCE") + (synopsis + "Many-Core Engine for Perl providing parallel processing capabilities") + (description "MCE spawns a pool of workers and therefore does not fork a +new process per each element of data. Instead, MCE follows a bank queuine +model. MCE enhances that model by adding the ability to chunk the next n +elements from the input stream to the next available worker.") + (license license:perl-license))) + +(define-public perl-sereal-decoder + (package + (name "perl-sereal-decoder") + (version "4.018") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/Y/YV/YVES/Sereal-Decoder-" + version + ".tar.gz")) + (sha256 + (base32 + "0wfdixpm3p94mnng474l0nh9mjiy8q8hbrbh2af4vwn2hmazr91f")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "zstd"))))) + (build-system perl-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "inc/Sereal/BuildTools.pm" + (("-lzstd") + (string-append "-L" (assoc-ref inputs "zstd:lib") + "/lib -lzstd")))))))) + (native-inputs + `(("perl-test-deep" ,perl-test-deep) + ("perl-test-differences" ,perl-test-differences) + ("perl-test-longstring" ,perl-test-longstring) + ("perl-test-warn" ,perl-test-warn))) + (inputs + `(("zstd:lib" ,zstd "lib"))) + (home-page "https://metacpan.org/release/Sereal-Decoder") + (synopsis "Fast, compact, powerful binary deserialization") + (description + "Sereal::Decoder implements a deserializer for an efficient, +compact-output, and feature-rich binary protocol called Sereal.") + (license license:perl-license))) + +(define-public perl-sereal-encoder + (package + (name "perl-sereal-encoder") + (version "4.018") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/Y/YV/YVES/Sereal-Encoder-" + version + ".tar.gz")) + (sha256 + (base32 + "0z9dbkr8ggjqb5g1sikxhy1a359bg08gs3vfg9icqm6xx4gjsv6p")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "zstd"))))) + (build-system perl-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "inc/Sereal/BuildTools.pm" + (("-lzstd") + (string-append "-L" (assoc-ref inputs "zstd:lib") + "/lib -lzstd")))))))) + (native-inputs + `(("perl-sereal-decoder" ,perl-sereal-decoder) + ("perl-test-deep" ,perl-test-deep) + ("perl-test-differences" ,perl-test-differences) + ("perl-test-longstring" ,perl-test-longstring) + ("perl-test-warn" ,perl-test-warn))) + (inputs + `(("zstd:lib" ,zstd "lib"))) + (home-page "https://metacpan.org/release/Sereal-Encoder") + (synopsis "Fast, compact, powerful binary serialization") + (description + "Sereal::Encoder implements an efficient, compact-output, and feature-rich +serializer using a binary protocol called Sereal.") + (license license:perl-license))) + +(define-public perl-module-load-conditional + (package + (name "perl-module-load-conditional") + (version "0.74") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/B/BI/BINGOS/Module-Load-Conditional-" + version + ".tar.gz")) + (sha256 + (base32 + "0c57c3632657hyhkijxhrk5jsfd09q4dm5d0qbmz281q76lm9hsl")))) + (build-system perl-build-system) + (home-page "https://metacpan.org/release/Module-Load-Conditional") + (synopsis "Looking up module information / loading at runtime") + (description + "Module::Load::Conditional provides simple ways to query and possibly load +any of the modules you have installed on your system during runtime. It is able +to load multiple modules at once or none at all if one of them was not able to +load. It also takes care of any error checking and so forth.") + (license license:perl-license))) + +(define-public perl-scalar-util-numeric + (package + (name "perl-scalar-util-numeric") + (version "0.40") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/C/CH/CHOCOLATE/Scalar-Util-Numeric-" + version + ".tar.gz")) + (sha256 + (base32 + "0h24rji5rkwa0mkggmr5anin92dg87ygnhhr3idxn0q785ninl6p")))) + (build-system perl-build-system) + (home-page "https://metacpan.org/release/Scalar-Util-Numeric") + (synopsis "numeric tests for perl scalars") + (description + "Scalar::Util::Numeric exports a number of wrappers around perl's builtin +@code{looks_like_number} function, which returns the numeric type of its +argument, or 0 if it isn't numeric.") + (license license:perl-license))) + +(define-public perl-math-utils + (package + (name "perl-math-utils") + (version "1.14") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cpan/authors/id/J/JG/JGAMBLE/Math-Utils-" + version + ".tar.gz")) + (sha256 + (base32 + "1596bwij103w4w5m7102c7bj9x4sjr8a7cibp5qjcqkafgh0m8l8")))) + (build-system perl-build-system) + (native-inputs + `(("perl-module-build" ,perl-module-build))) + (home-page "https://metacpan.org/release/Math-Utils") + (synopsis "Useful mathematical functions not in Perl") + (description + "Math::Utils is a broad collection of useful mathematical functions not +available in core perl. In addition to general-purpose functions such as +log10(), log2(), floor() or fsum(), there are generators to create comparison +functions for floating point (non-integer) numbers as well as some polynomial +operations on plain lists of coefficients.") + (license license:perl-license))) |