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authorDennis E. Mungai2016-03-01 14:25:45 +0300
committerDennis E. Mungai2016-03-01 14:25:45 +0300
commita0d619f653690ce68e232d8d2b944768f9e2abdc (patch)
treee10b23f86231c238299a770d900a709923d76e33 /gn/packages/hyphy.scm
parentef781382de7febeec2b4b8f854c88923d9f72e5f (diff)
parentc9c9ff5f70e0fbb08c6b15d9cfc7a541b34cc818 (diff)
downloadguix-bioinformatics-a0d619f653690ce68e232d8d2b944768f9e2abdc.tar.gz
Merge pull request #3 from genenetwork/master
Pull in Pjotr's changes.
Diffstat (limited to 'gn/packages/hyphy.scm')
-rw-r--r--gn/packages/hyphy.scm63
1 files changed, 21 insertions, 42 deletions
diff --git a/gn/packages/hyphy.scm b/gn/packages/hyphy.scm
index 23c0406..fea73a4 100644
--- a/gn/packages/hyphy.scm
+++ b/gn/packages/hyphy.scm
@@ -17,7 +17,7 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gn packages hyphy)
- #:use-module ((guix licenses))
+ #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
@@ -54,52 +54,31 @@
(sha256
(base32
"00i3609nywb1xfq50p3kvfbvahql241ciq23jrf67z0yp4y5l5a9"))))
- (native-inputs `(("autoconf" ,autoconf)
- ("automake" ,automake)
- ("cmake" ,cmake)
- ("gawk" ,gawk)
- ("libtool" ,libtool)
- ("pkg-config" ,pkg-config)))
- (inputs `(("boost" ,boost)
- ("curl" ,curl)
- ("atlas" ,atlas)
- ("dbus" ,dbus)
- ("enca" ,enca)
- ("eudev" ,eudev)
- ("glew" ,glew)
- ("lapack" ,lapack)
- ("libcap" ,libcap)
- ("libjpeg" ,libjpeg)
- ("libltdl" ,libltdl)
- ("libtiff" ,libtiff)
- ("libyajl" ,libyajl)
- ("mesa-utils" ,mesa-utils)
- ("mysql" ,mysql)
- ("python" ,python-2)
- ("freeimage" ,freeimage)
- ("fftw" ,fftw)
- ("fftwf" ,fftwf)
- ("fftw-openmpi" ,fftw-openmpi)
- ("glew" ,glew)
- ("glu" ,glu)
- ("openblas" ,openblas)
- ("git" ,git)
- ("cmake" ,cmake)))
+ (inputs
+ `(("python" ,python-2)
+ ("fftw-openmpi" ,fftw-openmpi)))
(build-system cmake-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
- (add-after 'unpack `bootstrap
- (lambda _
- (zero? (system* "make" "MPI")))))))
+ (add-after 'unpack `bootstrap
+ (lambda _
+ (zero? (system* "make" "MPI")))))))
(arguments
- `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release") #:tests? #f))
- (synopsis "hyphy: an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.")
- (description "HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning.
- It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for
- parallel computing environments (via message passing interface (MPI)) and it can be compiled as a shared library and called from other programming environments such as
- Python and R. ")
+ `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release")
+ #:tests? #f))
+ (synopsis "hyphy: an open-source software package for the analysis
+of genetic sequences using techniques in phylogenetics, molecular
+evolution, and machine learning.")
+ (description "HyPhy is an open-source software package for the
+analysis of genetic sequences using techniques in phylogenetics,
+molecular evolution, and machine learning. It features a complete
+graphical user interface (GUI) and a rich scripting language for
+limitless customization of analyses. Additionally, HyPhy features
+support for parallel computing environments (via message passing
+interface (MPI)) and it can be compiled as a shared library and called
+from other programming environments such as Python and R. ")
(home-page "http://hyphy.org")
- (license (list gpl2 gpl2+ gpl3 gpl3+))))
+ (license license:expat)))