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| author | Efraim Flashner | 2019-07-28 08:00:59 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2019-07-29 04:41:31 -0500 |
| commit | 89d2b75fa9254baa8ff0c95a5ad739b2453d23b5 (patch) | |
| tree | 8780fbe0127fe7c66f24efa1e613a95a37159793 /gn/packages/genenetwork.scm | |
| parent | 65d03f34c36d2e83a6c63de1f8fa9a8f91f90b35 (diff) | |
| download | guix-bioinformatics-89d2b75fa9254baa8ff0c95a5ad739b2453d23b5.tar.gz | |
gn: Add rust-qtlreaper and dependencies.
* gn/packages/genenetwork.scm (rust-qtlreaper): New variable.
* gn/packages/crates-io.scm (~300 packages): New variables.
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 52 |
1 files changed, 52 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 4386aff..553fbd7 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -7,6 +7,7 @@ #:use-module (guix download) #:use-module (guix git-download) #:use-module (guix build-system gnu) + #:use-module (guix build-system cargo) #:use-module (guix build-system cmake) #:use-module (guix build-system perl) #:use-module (guix build-system python) @@ -21,6 +22,8 @@ #:use-module (gnu packages compression) #:use-module (gnu packages check) #:use-module (gnu packages cran) + #:use-module (gn packages crates-io) + #:use-module (gnu packages crates-io) #:use-module (gnu packages databases) #:use-module (gnu packages cpio) #:use-module (gn packages elixir) @@ -244,6 +247,55 @@ bootstrap resampling to estimate the confidence region for the location of a putative QTL.") (license license:gpl2+)))) +(define-public rust-qtlreaper + (let ((commit "eacf6ff1c3d1cd16084a70a7a425bd77080c15de") + (revision "1")) + (package + (name "rust-qtlreaper") + (version (git-version "0.1.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/chfi/rust-qtlreaper.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0gr2z54i11zz94ra4w06fhfnwnmmhl5xyc8qhlk0v2qq18yfi7ji")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-rand" ,rust-rand-0.6) + ("rust-structopt" ,rust-structopt) + ("rust-rayon" ,rust-rayon-1.0) + ("rust-serde" ,rust-serde) + ("rust-serde-json" ,rust-serde-json)) + #:phases + (modify-phases %standard-phases + (add-after 'configure 'regenerate-cargo-lock + (lambda _ + (delete-file "Cargo.lock") + (invoke "cargo" "generate-lockfile"))) + (add-after 'patch-generated-file-shebangs 'patch-cargo-checksums + (lambda _ + (use-modules (guix build cargo-utils)) + (for-each + (lambda (filename) + (use-modules (guix build cargo-utils)) + (delete-file filename) + (let* ((dir (dirname filename))) + (display (string-append + "patch-cargo-checksums: generate-checksums for " + dir "\n")) + (generate-checksums dir))) + (find-files "guix-vendor" ".cargo-checksum.json")) + #t))))) + (home-page "https://github.com/chfi/rust-qtlreaper") + (synopsis "Reimplementation of genenetwork/QTLReaper in Rust") + (description "Reimplementation of genenetwork/QTLReaper in Rust") + (license #f)))) + (define-public genenetwork2 (let ((commit "1538ffd33af19e6ac922b4ee85fe701408968dfd")) (package |