diff options
| author | Efraim Flashner | 2019-10-27 22:16:57 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2019-10-27 22:33:23 +0200 |
| commit | 390ef237bb57e83a3fb2c67a37c23ba160d7fd30 (patch) | |
| tree | 421b5ece300dc1f9fe6670d3ef8614cd6edc9773 /gn/packages/genenetwork.scm | |
| parent | f21c617cd645521135e23409131606916f2caa81 (diff) | |
| download | guix-bioinformatics-390ef237bb57e83a3fb2c67a37c23ba160d7fd30.tar.gz | |
gn: Adjust to upstream crate changes.
* gn/packages/crates-io.scm: Remove upstreamed crates. * gn/packages/genenetwork.scm (rust-qtlreaper)[arguments]: Update cargo-development-inputs. Remove custom 'update-test-data phase to munge test data.
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 26 |
1 files changed, 9 insertions, 17 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 3ca1456..9f0b3f0 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -15,6 +15,7 @@ #:use-module (gnu packages bootstrap) #:use-module (gnu packages check) #:use-module (gnu packages cran) + #:use-module (gnu packages crates-io) #:use-module (gnu packages compression) #:use-module (gnu packages databases) #:use-module (gnu packages python) @@ -212,9 +213,9 @@ location of a putative QTL.") ("rust-arrayvec" ,rust-arrayvec-0.4) ("rust-atty" ,rust-atty-0.2) ("rust-autocfg" ,rust-autocfg-0.1) - ("rust-bitflags" ,rust-bitflags-1.0) + ("rust-bitflags" ,rust-bitflags-1) ("rust-cfg-if" ,rust-cfg-if-0.1) - ("rust-clap" ,rust-clap-2.33) + ("rust-clap" ,rust-clap-2) ("rust-cloudabi" ,rust-cloudabi-0.0) ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.2) ("rust-crossbeam-epoch" ,rust-crossbeam-epoch-0.3) @@ -233,12 +234,13 @@ location of a putative QTL.") ("rust-num-cpus" ,rust-num-cpus-1.10) ("rust-num-traits" ,rust-num-traits-0.2) ("rust-numtoa" ,rust-numtoa-0.1) + ("rust-proc-macro2" ,rust-proc-macro2-1.0) ("rust-proc-macro2" ,rust-proc-macro2-0.4) + ("rust-quote" ,rust-quote-1.0) ("rust-quote" ,rust-quote-0.6) ("rust-rand" ,rust-rand-0.6) ("rust-rand-chacha" ,rust-rand-chacha-0.1) - ("rust-rand-core-0.4" ,rust-rand-core-0.4) - ("rust-rand-core-0.3" ,rust-rand-core-0.3) + ("rust-rand-core" ,rust-rand-core-0.3) ("rust-rand-hc" ,rust-rand-hc-0.1) ("rust-rand-isaac" ,rust-rand-isaac-0.1) ("rust-rand-jitter" ,rust-rand-jitter-0.1) @@ -259,26 +261,16 @@ location of a putative QTL.") ("rust-strsim" ,rust-strsim-0.8) ("rust-structopt" ,rust-structopt-0.2) ("rust-structopt-derive" ,rust-structopt-derive-0.2) + ("rust-syn" ,rust-syn-1.0) ("rust-syn" ,rust-syn-0.15) ("rust-termion" ,rust-termion-1.5) ("rust-textwrap" ,rust-textwrap-0.11) ("rust-unicode-segmentation" ,rust-unicode-segmentation-1.3) ("rust-unicode-width" ,rust-unicode-width-0.1) + ("rust-unicode-xid" ,rust-unicode-xid-0.2) ("rust-unicode-xid" ,rust-unicode-xid-0.1) ("rust-vec-map" ,rust-vec-map-0.8) - ("rust-winapi" ,rust-winapi-0.3) - ("rust-winapi-i686-pc-windows-gnu" ,rust-winapi-i686-pc-windows-gnu-0.4) - ("rust-winapi-x86-64-pc-windows-gnu" ,rust-winapi-x86-64-pc-windows-gnu-0.4)) - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'update-test-data - (lambda _ - (substitute* "src/geneobject.rs" - ;; array![Genotype::Unk, Genotype::Unk, Genotype::Pat] - (("0.3421367343627405") "0.3421367343627406") - ;; array![Genotype::Unk, Genotype::Unk, Genotype::Unk] - (("-0.3223330030526561") "-0.32233300305265566")) - #t))))) + ("rust-winapi" ,rust-winapi-0.3)))) (home-page "https://github.com/chfi/rust-qtlreaper") (synopsis "Reimplementation of genenetwork/QTLReaper in Rust") (description "Reimplementation of genenetwork/QTLReaper in Rust") |