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| author | pjotrp | 2016-08-16 12:23:33 +0000 |
|---|---|---|
| committer | pjotrp | 2016-08-16 12:23:33 +0000 |
| commit | e73d1d766905b5f98f68d1799a88a3b86c1ff9f9 (patch) | |
| tree | f1200be3879bbb3de5a6a9e010b1071787c1f456 /gn/packages/genenetwork.scm | |
| parent | 64f5bc2344bed0f426facc5d9cbbf0fcceed5683 (diff) | |
| download | guix-bioinformatics-e73d1d766905b5f98f68d1799a88a3b86c1ff9f9.tar.gz | |
Updated and fixed plink-ng gn-stable
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 81873d5..a7317c6 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -163,8 +163,8 @@ ("mysql" ,mysql) ("gemma" ,gemma-git) ("genenetwork2-files-small" ,genenetwork2-files-small) + ("plink-ng" ,plink-ng) ("pylmm-gn2" ,pylmm-gn2) - ;; ("plink2" ,plink-ng) disabled - FIXME ("nginx" ,nginx) ("python2-flask" ,python2-flask) ("python2-htmlgen-gn" ,python2-htmlgen-gn) @@ -200,14 +200,14 @@ (let* ( (datafiles (string-append (assoc-ref inputs "genenetwork2-files-small") "/share/genenetwork2" )) (pylmmcmd (string-append (assoc-ref inputs "pylmm-gn2") "/bin/pylmm_redis")) - ;; (plink2cmd (string-append (assoc-ref inputs "plink2") "/bin/plink2")) + (plink2cmd (string-append (assoc-ref inputs "plink-ng") "/bin/plink2")) (gemmacmd (string-append (assoc-ref inputs "gemma") "/bin/gemma")) ) (substitute* '("etc/default_settings.py") (("^GENENETWORK_FILES =.*") (string-append "GENENETWORK_FILES = \"" datafiles "\"\n" )) (("^PYLMM_COMMAND =.*") (string-append "PYLMM_COMMAND = \"" pylmmcmd "\"\n" )) - ;; (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) + (("^PLINK_COMMAND =.*") (string-append "PLINK_COMMAND = \"" plink2cmd "\"\n" )) (("^GEMMA_COMMAND =.*") (string-append "GEMMA_COMMAND = \"" gemmacmd "\"\n" )) ) )))) |