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| author | Efraim Flashner | 2020-07-26 15:21:30 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2020-07-26 15:21:30 +0300 |
| commit | 398759fae8ccf4354e751cc3405e0a486bf39439 (patch) | |
| tree | 9723dcbc8c55270b48883f22507156b3ba2ef7cd /gn/packages/genenetwork.scm | |
| parent | 051d2fc1f66c84c1ea0da0e49fa6712eb07414fa (diff) | |
| download | guix-bioinformatics-398759fae8ccf4354e751cc3405e0a486bf39439.tar.gz | |
A running genenetwork
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index 214f040..36975bd 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -694,10 +694,9 @@ written in C") (base32 "1s735dj8kf98gf5w58p10zzyc5766gn27j4j5yh07ksadg7h1kdi")))) (build-system gnu-build-system) - (propagated-inputs + (native-inputs `(("ghostscript" ,ghostscript) ("graphviz" ,graphviz-2.26) - ("httpd" ,httpd22-mod-python-24) ("python24" ,python-2.4) ("python-piddle" ,python24-piddle) ("wget" ,wget))) @@ -708,8 +707,9 @@ written in C") (delete 'configure) (delete 'build) (add-after 'patch-generated-file-shebangs 'patch-more-files - (lambda* (#:key inputs #:allow-other-keys) - (let ((piddle (assoc-ref inputs "python-piddle"))) + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((piddle (assoc-ref inputs "python-piddle")) + (out (assoc-ref outputs "out"))) (substitute* "web/webqtl/networkGraph/networkGraphUtils.py" (("/usr/local/bin/neato") (which "neato")) (("/usr/local/bin/circo") (which "circo")) @@ -730,6 +730,7 @@ written in C") (("/usr/bin/python") (which "python")) (("/usr/bin/env python") (which "python"))) (substitute* "web/webqtl/base/webqtlConfigLocal.py" + (("/gnshare/gn") out) (("PythonPath.*") (string-append "PythonPath = '" (which "python") "'\n")) (("PIDDLE_FONT_PATH.*/lib") |