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| author | Muriithi Frederick Muriuki | 2017-01-25 13:46:47 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2017-01-25 13:46:47 +0300 |
| commit | 6d6dad1be767c46bb5be805eaa1f09e42d029e07 (patch) | |
| tree | c00b5e4542f6138c90fb2995577c430b45cbfdc5 /gn/packages/genenetwork.scm | |
| parent | 55b43eb79fca5b83d4adfab9b1fbdf309bbf72db (diff) | |
| parent | 77990bdcb4a85ed044dd5dd9bf49f2515b9ce742 (diff) | |
| download | guix-bioinformatics-6d6dad1be767c46bb5be805eaa1f09e42d029e07.tar.gz | |
Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics
Conflicts:
gn/packages/ldc.scm
Diffstat (limited to 'gn/packages/genenetwork.scm')
| -rw-r--r-- | gn/packages/genenetwork.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index a7317c6..dfbba02 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -87,6 +87,41 @@ (description #f) (license #f))) +(define-public qtlreaper + (let ((commit "71fbbe2b35e4f54937be2d54d09fb71d25fe5fad")) + (package + (name "qtlreaper") + (version (string-append "1.1-gn2" (string-take commit 7) )) + (source (origin + (method git-fetch) + (uri (git-reference + ;; (url "https://github.com/genenetwork/genenetwork2.git") + (url "https://github.com/pjotrp/QTLreaper.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7))) + (sha256 + (base32 + "0g0v20lh7773cm2xdqz6xzwjw4130y265n79z5x20p5aja5y5kmg")))) + (build-system python-build-system) + ;; (native-inputs + ;; `(("python-setuptools" ,python-setuptools))) + (arguments + `(#:python ,python-2 + )) + (home-page "http://qtlreaper.sourceforge.net/") + (synopsis "Tool for scanning expression data for QTLs") + (description + "Batch-oriented version of WebQTL. It requires, as input, +expression data from members of a set of recombinant inbred lines and +genotype information for the same lines. It searches for an +association between each expression trait and all genotypes and +evaluates that association by a permutation test. For the permutation +test, it performs only as many permutations as are necessary to define +the empirical P-value to a reasonable precision. It also performs +bootstrap resampling to estimate the confidence region for the +location of a putative QTL.") + (license license:gpl2+)))) + (define-public genenetwork1 (let ((commit "d622c803b")) (package @@ -157,6 +192,7 @@ (propagated-inputs `( ;; propagated for development purposes ("python" ,python-2) ;; probably superfluous ("r" ,r) + ("r-ctl" ,r-ctl) ("r-wgcna" ,r-wgcna) ("r-qtl" ,r-qtl) ("redis" ,redis) |