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authorpjotrp2024-04-01 11:42:19 +0200
committerpjotrp2024-04-01 11:43:41 +0200
commit4a8d467bcf0024960f3b88842be32a64f610c022 (patch)
tree5ebb7a56c421b280047b373737d1173e1c8c6e55 /gn/packages/genenetwork.scm
parent184ef672921b525dd542e44eff5f17a77952394a (diff)
downloadguix-bioinformatics-4a8d467bcf0024960f3b88842be32a64f610c022.tar.gz
gn: genenetwork3: sorted package names and added R to propagated inputs to make Rscript available on the path
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r.
Diffstat (limited to 'gn/packages/genenetwork.scm')
-rw-r--r--gn/packages/genenetwork.scm17
1 files changed, 9 insertions, 8 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index ce99066..e439fdd 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -140,9 +140,13 @@
(list gemma-wrapper
python-wrapper
csvdiff
+ diffutils
gn-rust-correlation
- python-bcrypt ;; Replace use of bcrypt with argon below
+ python-authlib
python-argon2-cffi
+ python-bcrypt ;; Replace use of bcrypt with argon
+ python-biopython
+ python-email-validator
python-flask
python-flask-cors
python-lmdb
@@ -152,24 +156,21 @@
python-pingouin-without-tests
python-plotly
python-pyld
- python-scikit-learn
python-pymonad
python-redis
python-requests
+ python-scikit-learn
python-scipy
- python-authlib
python-sparqlwrapper
- python-email-validator
python-xapian-bindings
- python-biopython
+ r
+ r-ctl
r-optparse
r-qtl
r-rjson
r-stringi
r-wgcna
- r-ctl
- rust-qtlreaper
- diffutils))
+ rust-qtlreaper))
(build-system python-build-system)
(arguments
(list #:phases