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| author | pjotrp | 2017-08-29 10:10:39 +0000 |
|---|---|---|
| committer | pjotrp | 2017-08-29 10:10:39 +0000 |
| commit | b618fcdc5ae1324cd9638cfc15bd127ad203d3ec (patch) | |
| tree | 60c72464f82a5a54a967d3bf3bfeabda3a0c7033 /gn/packages/gemma.scm | |
| parent | 967bb453503c6d7354a2e48b34dc36cefda3db5e (diff) | |
| download | guix-bioinformatics-b618fcdc5ae1324cd9638cfc15bd127ad203d3ec.tar.gz | |
Trying to locate GEMMA - not working
Diffstat (limited to 'gn/packages/gemma.scm')
| -rw-r--r-- | gn/packages/gemma.scm | 13 |
1 files changed, 11 insertions, 2 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 2b6bba4..62829d6 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -192,9 +192,18 @@ association studies (GWAS).") (base32 "16csqx5y63i5z0zkk1nq671n0vba482faskgsp1x1h75majqjdql")))) (build-system ruby-build-system) - (propagated-inputs `(("gemma-git-gn2" ,gemma-git-gn2))) + (inputs `(("gemma-git-gn2" ,gemma-git-gn2))) (arguments - `(#:tests? #f)) + `(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-before + 'install 'set-gemma-path + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "bin/gemma-wrapper" + (("GEMMA_COMMAND=options[:gemma_command]") + (string-append "GEMMA_COMMAND=" (which "gemma")))))))))) (synopsis "Gemma wrapper for LOCO and caching") (description "Gemma wrapper") |