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| author | Pjotr Prins | 2017-12-18 11:11:31 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2017-12-18 11:11:31 -0600 |
| commit | a2aac2366893dacd4549b7c535cf45391088e044 (patch) | |
| tree | 90775212da3bead7c385a3599174dde5730460ac /gn/packages/gemma.scm | |
| parent | a2a200402b91a352dbdede01eec85accb892b8e1 (diff) | |
| download | guix-bioinformatics-a2aac2366893dacd4549b7c535cf45391088e044.tar.gz | |
Blas testing
Diffstat (limited to 'gn/packages/gemma.scm')
| -rw-r--r-- | gn/packages/gemma.scm | 20 |
1 files changed, 16 insertions, 4 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm index 05010a8..ab1ac9b 100644 --- a/gn/packages/gemma.scm +++ b/gn/packages/gemma.scm @@ -76,7 +76,10 @@ "1bd03c5xni0bla0wg1wba841b36b0sg13sjja955kn5xzvy4i61a")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ;no "check" target + + `( + #:tests? #f ;no "check" target + ;; DYNAMIC_ARCH is only supported on x86. When it is disabled and no ;; TARGET is specified, OpenBLAS will tune itself to the build host, so ;; we need to disable substitutions. @@ -87,8 +90,16 @@ (string-prefix? "mips" system) (string-prefix? "aarch64" system))) #:make-flags - (list (string-append "PREFIX=" (assoc-ref %outputs "out")) + (list (string-append + "PREFIX=" (assoc-ref %outputs "out")) "SHELL=bash" + "NUM_THREADS=64" + "BINARY=64" + "NO_WARMUP=0" + "GEMM_MULTITHREAD_THRESHOLD=4" + "USE_THREAD=1" + "NO_AFFINITY=0" + "NO_LAPACK=1" ;; Build the library for all supported CPUs. This allows ;; switching CPU targets at runtime with the environment variable ;; OPENBLAS_CORETYPE=<type>, where "type" is a supported CPU type. @@ -98,7 +109,7 @@ (cond ((or (string-prefix? "x86_64" system) (string-prefix? "i686" system)) - '("BINARY=64 @@ NO_WARMUP=0 GEMM_MULTITHREAD_THRESHOLD=4 USE_THREAD=1 NO_AFFINITY=0 NO_LAPACK=1 NUM_THREADS=64")) + '("BINARY=64 NO_WARMUP=0 GEMM_MULTITHREAD_THRESHOLD=4 USE_THREAD=1 NO_AFFINITY=0 NO_LAPACK=1 NUM_THREADS=64")) ;; On MIPS we force the "SICORTEX" TARGET, as for the other ;; two available MIPS targets special extended instructions ;; for Loongson cores are used. @@ -183,6 +194,7 @@ numbers.") "/include/eigen3/") "FORCE_DYNAMIC=1" "DEBUG=1" + "fast-check" ) #:phases ; "/include/eigen3/" @@ -196,7 +208,7 @@ numbers.") (lambda* (#:key outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out"))) (install-file "bin/gemma" (string-append out "/bin")))))) - ; #:tests? #f + #:tests? #f #:parallel-tests? #f)) (home-page "http://www.xzlab.org/software.html") (synopsis "Tool for genome-wide efficient mixed model association") |