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authorMuriithi Frederick Muriuki2018-06-30 13:37:48 +0300
committerMuriithi Frederick Muriuki2018-06-30 13:37:48 +0300
commitf293058e52b022d7fe17c9e56864919ac6e23caa (patch)
tree36f1559ed866e6b27d73b2e944cf9b1fa9da2d1f /gn/packages/edash.scm
parent71d84ec1ebc483233e25d775e93a69cb4262067c (diff)
downloadguix-bioinformatics-f293058e52b022d7fe17c9e56864919ac6e23caa.tar.gz
gn: Add edash
* gn/packages/edash.scm (python-s3transfer-0.1.13): New variable * gn/packages/edash.scm (python-botocore-1.10.48): New variable * gn/packages/edash.scm (python-boto3): New variable * gn/packages/edash.scm (edash): New variable
Diffstat (limited to 'gn/packages/edash.scm')
-rw-r--r--gn/packages/edash.scm131
1 files changed, 131 insertions, 0 deletions
diff --git a/gn/packages/edash.scm b/gn/packages/edash.scm
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+(define-module (gn packages edash)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix build-system trivial)
+ #:use-module (guix build-system python)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-web)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages time)
+ #:use-module (gnu packages check)
+ #:use-module (gn packages web))
+
+(define-public python-s3transfer-0.1.13
+ (package
+ (name "python-s3transfer")
+ (version "0.1.13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "s3transfer" version))
+ (sha256
+ (base32
+ "1harvyn1s8v54n1w5h7c0lg4bgjh68aylhg28s8n174q53h1ip4h"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f))
+ (home-page "https://github.com/boto/s3transfer")
+ (synopsis "Amazon S3 Transfer Manager")
+ (description "S3transfer is a Python library for managing Amazon S3
+transfers.")
+ (license license:asl2.0)))
+
+(define-public python-botocore-1.10.48
+ (package
+ (name "python-botocore")
+ (version "1.10.48")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "botocore" version))
+ (sha256
+ (base32
+ "1432drc7482nwrppwkk1i6ars3wz9w2g9rsxkz5nlxmyf9qm260j"))))
+ (build-system python-build-system)
+ (arguments
+ ;; FIXME: Many tests are failing.
+ '(#:tests? #f))
+ (propagated-inputs
+ `(("python-dateutil" ,python-dateutil)
+ ("python-docutils" ,python-docutils)
+ ("python-jmespath" ,python-jmespath)))
+ (native-inputs
+ `(("python-mock" ,python-mock)
+ ("python-nose" ,python-nose)
+ ("behave" ,behave)
+ ("python-tox" ,python-tox)
+ ("python-wheel" ,python-wheel)))
+ (home-page "https://github.com/boto/botocore")
+ (synopsis "Low-level interface to AWS")
+ (description "Botocore is a Python library that provides a low-level
+interface to the Amazon Web Services (AWS) API.")
+ (license license:asl2.0)))
+
+(define-public python-boto3
+ (package
+ (name "python-boto3")
+ (version "1.7.48")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "boto3" version))
+ (sha256
+ (base32
+ "1pnm5pj70kaa8pbq39i2y70h17cazk8nkjqh12b8xqks7ywjr9f5"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f))
+ (propagated-inputs
+ `(("python-botocore" ,python-botocore-1.10.48)
+ ("python-jmespath" ,python-jmespath)
+ ("python-s3transfer" ,python-s3transfer-0.1.13)))
+ (home-page "https://github.com/boto/boto3")
+ (synopsis "The AWS SDK for Python")
+ (description "The AWS SDK for Python")
+ (license license:asl2.0)))
+
+(define-public edash
+ (let ((md5 "93e745e9c"))
+ (package
+ (name "edash")
+ (version "0.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri "http://biogems.info/genenetwork2-2.0-a8fcff4.svg") ; any old file
+ (file-name (string-append name "-" md5))
+ (sha256
+ (base32 "0rir1mcn3a8i1mbw3ppgnjl7wg71mapljik7n3v5i8j5ic95mqr5"))))
+ (build-system trivial-build-system)
+ (native-inputs `(("unzip" ,unzip)
+ ("source" ,source)))
+ (inputs `(("sassc" ,sassc)))
+ (propagated-inputs
+ `(("python" ,python)
+ ("python-elasticsearch" ,python-elasticsearch)
+ ("python-flask" ,python-flask)
+ ("python-jinja2" ,python-jinja2)
+ ("python-markdown" ,python-markdown)
+ ("python-misaka" ,python-misaka)
+ ("python-pygit2" ,python-pygit2)
+ ("web-bootstrap" ,web-bootstrap)
+ ("sassc" ,sassc)
+ ("python-boto3" ,python-boto3)))
+ (arguments
+ `(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils))
+ (let ((target (string-append (assoc-ref %outputs "out")
+ "/share")))
+ (write target)
+ (mkdir-p target)
+ ; (copy-recursively (assoc-ref %build-inputs "source") target)
+ #t))))
+
+ (home-page "https://gitlab.com/unless-emtec/live-service")
+ (synopsis "EMTech's edash service")
+ (description "EMTech's edash service package.")
+ (license license:agpl3+))))