Module

1 files changed, 131 insertions, 0 deletions

diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm
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+;; Experimental packaging for the Common Workflow Language (started by Bruno)
+
+(define-module (gn packages cwl)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages python)
+  #:use-module (guix download)
+  #:use-module (guix packages)
+  #:use-module (guix git-download)
+  #:use-module (guix utils)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
+  #:use-module (guix build-system trivial)
+  #:use-module (srfi srfi-1))
+
+(define-public python-cwltool
+  (package
+    (name "python-cwltool")
+    (version "1.0.20150916041152")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+               "https://pypi.python.org/packages/source/c/cwltool/cwltool-"
+               version
+               ".tar.gz"))
+        (sha256
+          (base32
+            "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2"))))
+    (build-system python-build-system)
+    (inputs
+      `(("python-setuptools" ,python-setuptools)))
+    (home-page
+      "https://github.com/common-workflow-language/common-workflow-language")
+    (synopsis
+      "Common workflow language reference implementation")
+    (description
+      "Common workflow language reference implementation")
+    (license asl2.0)))
+
+(define-public python-rdflib-jsonld
+  (package
+    (name "python-rdflib-jsonld")
+    (version "0.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+               "https://pypi.python.org/packages/source/r/rdflib-jsonld/rdflib-jsonld-"
+               version
+               ".tar.gz"))
+        (sha256
+          (base32
+            "121a876k49xl85jvikyh4hzvm34456ikw66cra5dfyr15br1qjll"))))
+    (build-system python-build-system)
+    (inputs
+      `(("python-setuptools" ,python-setuptools)))
+    (home-page
+      "https://github.com/RDFLib/rdflib-jsonld")
+    (synopsis
+      "rdflib extension adding JSON-LD parser and serializer")
+    (description
+      "rdflib extension adding JSON-LD parser and serializer")
+    (license bsd-3)))
+    
+(define-public python-schema-salad
+  (package
+    (name "python-schema-salad")
+    (version "1.0.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+               "https://pypi.python.org/packages/source/s/schema-salad/schema-salad-"
+               version
+               ".tar.gz"))
+        (sha256
+          (base32
+            "09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37"))))
+    (build-system python-build-system)
+    (arguments `(#:tests? #f)) ;; No tests.
+    (inputs
+      `(("python-cython" ,python-cython)
+       ("python-setuptools" ,python-setuptools)
+       ("python-rdflib-jsonld" ,python-rdflib-jsonld)
+       ("python-rdflib" ,python-rdflib)
+       ("python-mistune" ,python-mistune)))
+    (propagated-inputs
+     `(("python-rdflib" ,python-rdflib)))
+    (native-inputs
+     `(("python-rdflib" ,python-rdflib)))
+    (home-page
+      "https://github.com/common-workflow-language/common-workflow-language")
+    (synopsis
+      "Schema Annotations for Linked Avro Data (SALAD)")
+    (description
+      "Schema Annotations for Linked Avro Data (SALAD)")
+    (license asl2.0)))
+    
+(define-public python-rdflib
+  (package
+    (name "python-rdflib")
+    (version "4.2.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+              "https://pypi.python.org/packages/source/r/rdflib/rdflib-"
+              version
+              ".tar.gz"))
+        (patches
+          ;; The patch has no effect under Python 3.
+          (list (search-patch "python2-rdflib-drop-sparqlwrapper.patch")))
+        (sha256
+          (base32
+            "1h3f8yl9frjz8rsykjdjk83qsrcvld3qa7pkzh69s91h97ydl83l"))))
+    (build-system python-build-system)
+    (inputs
+      `(("python-html5lib" ,python-html5lib)
+        ("python-isodate" ,python-isodate)
+        ("python-pyparsing" ,python-pyparsing)
+        ("python-setuptools" ,python-setuptools)))
+    (home-page "https://github.com/RDFLib/rdflib")
+    (synopsis
+      "Python RDF library")
+    (description
+      "RDFLib is a Python library for working with RDF, a simple yet
+powerful language for representing information.")
+    (license (non-copyleft "file://LICENSE"
+                           "See LICENSE in the distribution."))))
+