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| author | Pjotr Prins | 2018-12-11 21:50:50 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2018-12-11 21:50:50 -0600 |
| commit | f65893ba096bc4b190d9101cca8fe490af80109e (patch) | |
| tree | 2a2eac45bc2a3116540dcef891b39163e7a04db2 /gn/packages/cwl.scm | |
| parent | 4a1ef2cc9a5d01ca26ab99ddac73cb0fa18fbd08 (diff) | |
| download | guix-bioinformatics-f65893ba096bc4b190d9101cca8fe490af80109e.tar.gz | |
CWL: updating
Diffstat (limited to 'gn/packages/cwl.scm')
| -rw-r--r-- | gn/packages/cwl.scm | 26 |
1 files changed, 15 insertions, 11 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index 4f04f41..6980bb8 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -3,6 +3,7 @@ (define-module (gn packages cwl) #:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages) + #:use-module (gnu packages check) #:use-module (gnu packages python) #:use-module (gnu packages python-web) #:use-module (gnu packages rdf) @@ -19,7 +20,7 @@ (define-public python-cwltool ; guix: needs work (package (name "python-cwltool") - (version "1.0.20150916041152") + (version "1.0.20181012180214") (source (origin (method url-fetch) @@ -29,17 +30,23 @@ ".tar.gz")) (sha256 (base32 - "1kqxc6nvq4nr8qdv39ycdi6fhzaipgjpmbghsz94ij6jhf5r3dq2")))) + "0pk0jlac2vl6vfihdq07agzz9dasw84yjz5ladcbwnmzzl022cg7")))) (build-system python-build-system) (inputs - `(("python-setuptools" ,python-setuptools) + `(("python-bagit" ,python-bagit) + ("python-setuptools" ,python-setuptools) + ("python-pytest-cov" ,python-pytest-cov) + ("python-pytest-runner" ,python-pytest-runner) + ("python-typing-extensions" ,python-typing-extensions) + ("python-prov" ,python-prov) ("python-pyparsing" ,python-pyparsing) + ("python-subprocess32" ,python-subprocess32) )) (propagated-inputs `(("python-schema-salad" ,python-schema-salad) ("python-html5lib" ,python-html5lib) )) - (arguments `(#:tests? #f)) ;; CWL includes no tests. + ; (arguments `(#:tests? #f)) ;; CWL includes no tests. (home-page "https://github.com/common-workflow-language/common-workflow-language") (synopsis @@ -54,17 +61,14 @@ (define-public python-schema-salad (package (name "python-schema-salad") - (version "1.0.2") + (version "3.0.20181129082112") (source (origin (method url-fetch) - (uri (string-append - "https://pypi.python.org/packages/source/s/schema-salad/schema-salad-" - version - ".tar.gz")) + (uri (pypi-uri "schema-salad" version)) (sha256 (base32 - "09axiiirq73s1cs21n8mkdslaca2gxc2mlayyl6yiaq98cfgfh37")))) + "1xg70v82q053vz1sg8sc99alnkrm2kk05w6698vgmngl1767sk97")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;; CWL includes no tests. (inputs @@ -73,7 +77,7 @@ ("python-rdflib-jsonld" ,python-rdflib-jsonld) ("python-mistune" ,python-mistune))) (propagated-inputs - `(("python-rdflib-4.2" ,python-rdflib-4.2) + `(("python-rdflib" ,python-rdflib) ("python-avro" ,python-avro) ("python-pyyaml" ,python-pyyaml) ("python-requests" ,python-requests) |