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| author | Arun Isaac | 2024-03-11 19:07:08 +0000 |
|---|---|---|
| committer | Arun Isaac | 2024-03-11 19:07:08 +0000 |
| commit | 4a177f3666b4bc3936a1d6e94f888feddcaa3d31 (patch) | |
| tree | 2f4a1ac52aacb648092a5f6eaa131acac2ce2753 /gn/packages/cwl.scm | |
| parent | a32299d4d002485e8b8142a14b21d46d2bb3f989 (diff) | |
| download | guix-bioinformatics-4a177f3666b4bc3936a1d6e94f888feddcaa3d31.tar.gz | |
gn: Add python-cwltool.
* gn/packages/cwl.scm (python-cwltool): New variable.
Diffstat (limited to 'gn/packages/cwl.scm')
| -rw-r--r-- | gn/packages/cwl.scm | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index a327187..96dad02 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -4,7 +4,8 @@ #:use-module (guix packages) #:use-module (guix build-system python) #:use-module (gnu packages) - #:use-module (gnu packages bioinformatics)) + #:use-module (gnu packages bioinformatics) + #:use-module (gnu packages node) (define-public cwl-runner @@ -28,3 +29,15 @@ "Common workflow language alternate entry point to allow cwl-runner script as an implementation-agnostic script interpreter.") (license license:asl2.0))) + +;; python-toil tightly integrates with cwltool using it as a library. So, +;; create a library version of cwltool where inputs become propagated inputs. +(define-public python-cwltool + (package + (inherit cwltool) + (name "python-cwltool") + (inputs + (list node)) + (propagated-inputs + (modify-inputs (package-inputs cwltool) + (delete "node"))))) |