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| author | pjotrp | 2018-12-14 04:38:50 +0000 |
|---|---|---|
| committer | pjotrp | 2018-12-14 04:38:50 +0000 |
| commit | 2372ecc00bb08b033bba48316edd17ef9a6e974b (patch) | |
| tree | 91679c21f0bf75329bdfe2d0dc6e165b03a00b82 /gn/packages/cwl.scm | |
| parent | 792c615b32c8eef93a8da7993b1cda32b3e3a0b8 (diff) | |
| download | guix-bioinformatics-2372ecc00bb08b033bba48316edd17ef9a6e974b.tar.gz | |
CWL final packages - tests pass in principle (except for some networking)
Diffstat (limited to 'gn/packages/cwl.scm')
| -rw-r--r-- | gn/packages/cwl.scm | 29 |
1 files changed, 21 insertions, 8 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index 2642f90..785a6ed 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -6,8 +6,11 @@ #:use-module (gnu packages check) #:use-module (gnu packages python) #:use-module (gnu packages python-web) + #:use-module (gnu packages node) #:use-module (gnu packages rdf) #:use-module (gnu packages serialization) + #:use-module (gnu packages time) + #:use-module (gnu packages version-control) #:use-module (gn packages python) #:use-module (guix download) #:use-module (guix packages) @@ -33,23 +36,33 @@ (base32 "0pk0jlac2vl6vfihdq07agzz9dasw84yjz5ladcbwnmzzl022cg7")))) (build-system python-build-system) - (inputs - `(("python-bagit" ,python-bagit) + (propagated-inputs ; a lot of these are used for testing + `(("git" ,git) + ("node" ,node) + ("python-bagit" ,python-bagit) + ("python-arcp" ,python-arcp) ("python-setuptools" ,python-setuptools) + ("python-dateutil" ,python-dateutil) ("python-pytest-cov" ,python-pytest-cov) ("python-prov" ,python-prov) ("python-pytest-runner" ,python-pytest-runner) ("python-rdflib" ,python-rdflib) - ("python-typing-extensions" ,python-typing-extensions) ("python-pyparsing" ,python-pyparsing) + ("python-pytest-mock" ,python-pytest-mock) + ("python-mock" ,python-mock) ("python-subprocess32" ,python-subprocess32) ("python-ruamel.yaml" ,python-ruamel.yaml) ("python-cachecontrol" ,python-cachecontrol) + ("python-lxml" ,python-lxml) ("python-mypy-extensions" ,python-mypy-extensions) - )) - (propagated-inputs - `(("python-schema-salad" ,python-schema-salad) + ("python-mistune" ,python-mistune) + ("python-networkx" ,python-networkx) + ("python-schema-salad" ,python-schema-salad) ("python-html5lib" ,python-html5lib) + ("python-rdflib-jsonld" ,python-rdflib-jsonld) + ("python-typing-extensions" ,python-typing-extensions) + ("python-scandir" ,python-scandir) + ("python-psutil" ,python-psutil) )) ; (arguments `(#:tests? #f)) ;; CWL includes no tests. (arguments @@ -102,5 +115,5 @@ "Schema Annotations for Linked Avro Data (SALAD)") (license license:asl2.0))) -(define-public python2-schema-salad - (package-with-python2 python-schema-salad)) +; (define-public python2-schema-salad +; (package-with-python2 python-schema-salad)) |