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| author | Pjotr Prins | 2018-12-12 20:07:54 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2018-12-12 20:07:54 -0600 |
| commit | 792c615b32c8eef93a8da7993b1cda32b3e3a0b8 (patch) | |
| tree | fba81566edc1955788dd039a6fdb58fcb340f8d1 /gn/packages/cwl.scm | |
| parent | 7cdcccfd9cf87915969e0706042673114d2b1d91 (diff) | |
| download | guix-bioinformatics-792c615b32c8eef93a8da7993b1cda32b3e3a0b8.tar.gz | |
CWL builds
Diffstat (limited to 'gn/packages/cwl.scm')
| -rw-r--r-- | gn/packages/cwl.scm | 22 |
1 files changed, 16 insertions, 6 deletions
diff --git a/gn/packages/cwl.scm b/gn/packages/cwl.scm index 9b75c2b..2642f90 100644 --- a/gn/packages/cwl.scm +++ b/gn/packages/cwl.scm @@ -7,6 +7,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages python-web) #:use-module (gnu packages rdf) + #:use-module (gnu packages serialization) #:use-module (gn packages python) #:use-module (guix download) #:use-module (guix packages) @@ -17,9 +18,9 @@ ; #:use-module (guix build-system trivial) #:use-module (srfi srfi-1)) -(define-public python-cwltool ; guix: needs work +(define-public cwltool ; guix: needs work (package - (name "python-cwltool") + (name "cwltool") (version "1.0.20181012180214") (source (origin @@ -36,18 +37,30 @@ `(("python-bagit" ,python-bagit) ("python-setuptools" ,python-setuptools) ("python-pytest-cov" ,python-pytest-cov) + ("python-prov" ,python-prov) ("python-pytest-runner" ,python-pytest-runner) ("python-rdflib" ,python-rdflib) ("python-typing-extensions" ,python-typing-extensions) ("python-pyparsing" ,python-pyparsing) ("python-subprocess32" ,python-subprocess32) + ("python-ruamel.yaml" ,python-ruamel.yaml) + ("python-cachecontrol" ,python-cachecontrol) + ("python-mypy-extensions" ,python-mypy-extensions) )) (propagated-inputs `(("python-schema-salad" ,python-schema-salad) - ("python-prov" ,python-prov) ("python-html5lib" ,python-html5lib) )) ; (arguments `(#:tests? #f)) ;; CWL includes no tests. + (arguments + `(;#:phases + ; (modify-phases %standard-phases + ; (replace 'check + ; (lambda* (#:key inputs outputs #:allow-other-keys) + ; (invoke "python" "-m" "pytest") + ; ))) + #:tests? #f)) ; Disable for now + (home-page "https://github.com/common-workflow-language/common-workflow-language") (synopsis @@ -56,9 +69,6 @@ "Common workflow language reference implementation") (license license:asl2.0))) -(define-public python2-cwltool - (package-with-python2 python-cwltool)) - (define-public python-schema-salad (package (name "python-schema-salad") |