diff options
author | Efraim Flashner | 2019-08-13 05:23:04 -0500 |
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committer | Efraim Flashner | 2019-08-13 05:23:04 -0500 |
commit | c95495b1abfd6d0ed610a27e925c3cb6d5776dbf (patch) | |
tree | f75a1942f63d9d152e07c786d7e7285f34056dd9 /gn/packages/crates-io.scm | |
parent | df4e25920fea6e0d70332d19aab1b449e0fb2fe8 (diff) | |
download | guix-bioinformatics-c95495b1abfd6d0ed610a27e925c3cb6d5776dbf.tar.gz |
gn: Clean up some crates
Diffstat (limited to 'gn/packages/crates-io.scm')
-rw-r--r-- | gn/packages/crates-io.scm | 240 |
1 files changed, 200 insertions, 40 deletions
diff --git a/gn/packages/crates-io.scm b/gn/packages/crates-io.scm index 9e2774f..4da9217 100644 --- a/gn/packages/crates-io.scm +++ b/gn/packages/crates-io.scm @@ -545,7 +545,17 @@ #:cargo-development-inputs (("rust-clap" ,rust-clap) ("rust-diff" ,rust-diff) - ("rust-shlex" ,rust-shlex)))) + ("rust-shlex" ,rust-shlex)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-environmental-variable + (lambda* (#:key inputs #:allow-other-keys) + (let ((clang (assoc-ref inputs "libclang"))) + (setenv "LIBCLANG_PATH" + (string-append clang "/lib"))) + #t))))) + (inputs + `(("libclang" ,(@ (gnu packages llvm) clang)))) (home-page "https://rust-lang.github.io/rust-bindgen/") (synopsis @@ -772,7 +782,17 @@ `(#:cargo-inputs (("rust-nom" ,rust-nom)) #:cargo-development-inputs - (("rust-clang-sys" ,rust-clang-sys)))) + (("rust-clang-sys" ,rust-clang-sys)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-environmental-variable + (lambda* (#:key inputs #:allow-other-keys) + (let ((clang (assoc-ref inputs "libclang"))) + (setenv "LIBCLANG_PATH" + (string-append clang "/lib"))) + #t))))) + (inputs + `(("libclang" ,(@ (gnu packages llvm) clang)))) (home-page "https://github.com/jethrogb/rust-cexpr") (synopsis "A C expression parser and evaluator") @@ -2382,9 +2402,18 @@ pseudorandom number generator") ("rust-serde-derive" ,rust-serde-derive) ("rust-tempdir" ,rust-tempdir) ("rust-thread-id" ,rust-thread-id) - ("rust-time" ,rust-time)))) - ;(inputs - ; `(("libgit" ,(@ (gnu packages version-control) libgit2)))) + ("rust-time" ,rust-time)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-openssl + (lambda* (#:key inputs #:allow-other-keys) + (let ((openssl (assoc-ref inputs "openssl"))) + (setenv "OPENSSL_DIR" openssl)) + (setenv "LIBGIT2_SYS_USE_PKG_CONFIG" "1") + #t))))) + (inputs + `(("libgit" ,(@ (gnu packages version-control) libgit2)) + ("openssl" ,(@ (gnu packages tls) openssl)))) (home-page "https://github.com/rust-lang/git2-rs") (synopsis @@ -2906,6 +2935,44 @@ pseudorandom number generator") (license (list license:asl2.0 license:expat)))) +(define-public rust-jemalloc-ctl + (package + (name "rust-jemalloc-ctl") + (version "0.3.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "jemalloc-ctl" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1dx4mik2ww5ic4qqv5zx9dxq6pbkclxnxa9bscg4z4njkpzsa0n5")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-jemalloc-sys" ,rust-jemalloc-sys) + ("rust-libc" ,rust-libc) + ("rust-paste" ,rust-paste)) + #:cargo-development-inputs + (("rust-jemallocator" ,rust-jemallocator)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'override-jemalloc + (lambda* (#:key inputs #:allow-other-keys) + (let ((jemalloc (assoc-ref inputs "jemalloc"))) + (setenv "JEMALLOC_OVERRIDE" + (string-append jemalloc "/lib/libjemalloc_pic.a"))) + #t))))) + (inputs + `(("jemalloc" ,(@ (gnu packages jemalloc) jemalloc)))) + (home-page "https://github.com/gnzlbg/jemallocator") + (synopsis + "A safe wrapper over jemalloc's control and introspection APIs") + (description + "This package provides a safe wrapper over jemalloc's control and introspection APIs") + (license #f))) + (define-public rust-jemalloc-sys (package (name "rust-jemalloc-sys") @@ -2914,22 +2981,34 @@ pseudorandom number generator") (origin (method url-fetch) (uri (crate-uri "jemalloc-sys" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0ify9vlql01qhfxlj7d4p9jvcp90mj2h69nkbq7slccvbhzryfqd")))) + (base32 + "0ify9vlql01qhfxlj7d4p9jvcp90mj2h69nkbq7slccvbhzryfqd")) + ;(modules '((guix build utils))) + ;(snippet + ; '(begin + ; ;; unbundle jemalloc source + ; (delete-file-recursively "jemalloc") #t)) + )) (build-system cargo-build-system) (arguments - `(#:cargo-inputs - (("rust-libc" ,rust-libc) - ("rust-cc" ,rust-cc) - ("rust-fs-extra" ,rust-fs-extra)))) + `(#:cargo-inputs + (("rust-libc" ,rust-libc) + ("rust-cc" ,rust-cc) + ("rust-fs-extra" ,rust-fs-extra)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'override-jemalloc + (lambda* (#:key inputs #:allow-other-keys) + (let ((jemalloc (assoc-ref inputs "jemalloc"))) + (delete-file-recursively "jemalloc") + (setenv "JEMALLOC_OVERRIDE" + (string-append jemalloc "/lib/libjemalloc_pic.a"))) + #t))))) (inputs - `(("jemalloc" ,(@ (gnu packages jemalloc) jemalloc)) - ("rust-cc" ,rust-cc))) - (home-page - "https://github.com/gnzlbg/jemallocator") + `(("jemalloc" ,(@ (gnu packages jemalloc) jemalloc)))) + (home-page "https://github.com/gnzlbg/jemallocator") (synopsis "Rust FFI bindings to jemalloc") (description "Rust FFI bindings to jemalloc") (license (list license:asl2.0 @@ -2954,7 +3033,17 @@ pseudorandom number generator") (("rust-jemalloc-sys" ,rust-jemalloc-sys) ("rust-libc" ,rust-libc)) #:cargo-development-inputs - (("rust-paste" ,rust-paste)))) + (("rust-paste" ,rust-paste)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'override-jemalloc + (lambda* (#:key inputs #:allow-other-keys) + (let ((jemalloc (assoc-ref inputs "jemalloc"))) + (setenv "JEMALLOC_OVERRIDE" + (string-append jemalloc "/lib/libjemalloc_pic.a"))) + #t))))) + (inputs + `(("jemalloc" ,(@ (gnu packages jemalloc) jemalloc)))) (home-page "https://github.com/gnzlbg/jemallocator") (synopsis "A Rust allocator backed by jemalloc") (description @@ -3084,8 +3173,14 @@ pseudorandom number generator") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0y2mibmx7wy91s2kmb2gfb29mrqlqaxpy5wcwr8s1lwws7b9w5sc")))) + (base32 + "0y2mibmx7wy91s2kmb2gfb29mrqlqaxpy5wcwr8s1lwws7b9w5sc")) + ;(modules '((guix build utils))) + ;(snippet + ; '(begin + ; ;; unbundle jemalloc source + ; (delete-file-recursively "libgit2") #t)) + )) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -3095,9 +3190,22 @@ pseudorandom number generator") ("rust-openssl-sys" ,rust-openssl-sys)) #:cargo-development-inputs (("rust-cc" ,rust-cc) - ("rust-pkg-config" ,rust-pkg-config)))) - ;(inputs - ; `(("libgit" ,(@ (gnu packages version-control) libgit2)))) + ("rust-pkg-config" ,rust-pkg-config)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-openssl + (lambda* (#:key inputs #:allow-other-keys) + (let ((openssl (assoc-ref inputs "openssl"))) + (setenv "OPENSSL_DIR" openssl)) + (delete-file-recursively "libgit2") + (setenv "LIBGIT2_SYS_USE_PKG_CONFIG" "1") + (setenv "LIBSSH2_SYS_USE_PKG_CONFIG" "1") + #t))))) + (inputs + `(("libgit" ,(@ (gnu packages version-control) libgit2)) + ("openssl" ,(@ (gnu packages tls) openssl)) + ("pkg-config" ,(@ (gnu packages pkg-config) pkg-config)) + ("zlib" ,(@ (gnu packages compression) zlib)))) (home-page "https://github.com/rust-lang/git2-rs") (synopsis @@ -3144,8 +3252,14 @@ pseudorandom number generator") (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "17dz3xxy5bc73sr52maa6wdqmw1a0ymznrgfzlxid2rng101yshj")))) + (base32 + "17dz3xxy5bc73sr52maa6wdqmw1a0ymznrgfzlxid2rng101yshj")) + ;(modules '((guix build utils))) + ;(snippet + ; '(begin + ; ;; unbundle jemalloc source + ; (delete-file-recursively "libssh2") #t)) + )) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -3155,9 +3269,21 @@ pseudorandom number generator") ("rust-vcpkg" ,rust-vcpkg)) #:cargo-development-inputs (("rust-cc" ,rust-cc) - ("rust-pkg-config" ,rust-pkg-config)))) - ;(inputs - ; `(("libssh2" ,(@ (gnu packages ssh) libssh2)))) + ("rust-pkg-config" ,rust-pkg-config)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-openssl + (lambda* (#:key inputs #:allow-other-keys) + (let ((openssl (assoc-ref inputs "openssl"))) + (setenv "OPENSSL_DIR" openssl)) + (delete-file-recursively "libssh2") + (setenv "LIBSSH2_SYS_USE_PKG_CONFIG" "1") + #t))))) + (inputs + `(("libssh2" ,(@ (gnu packages ssh) libssh2)) + ("openssl" ,(@ (gnu packages tls) openssl)) + ("pkg-config" ,(@ (gnu packages pkg-config) pkg-config)) + ("zlib" ,(@ (gnu packages compression) zlib)))) (home-page "https://github.com/alexcrichton/ssh2-rs") (synopsis @@ -3167,7 +3293,6 @@ pseudorandom number generator") (license (list license:asl2.0 license:expat)))) -;; TODO: Unbundle zlib (define-public rust-libz-sys (package (name "rust-libz-sys") @@ -3179,7 +3304,13 @@ pseudorandom number generator") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1gjycyl2283525abks98bhxa4r259m617xfm5z52p3p3c8ry9d9f")))) + "1gjycyl2283525abks98bhxa4r259m617xfm5z52p3p3c8ry9d9f")) + ;(modules '((guix build utils))) + ;(snippet + ; '(begin + ; ;; unbundle jemalloc source + ; (delete-file-recursively "src/zlib") #t)) + )) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -3187,7 +3318,16 @@ pseudorandom number generator") #:cargo-development-inputs (("rust-cc" ,rust-cc) ("rust-pkg-config" ,rust-pkg-config) - ("rust-vcpkg" ,rust-vcpkg)))) + ("rust-vcpkg" ,rust-vcpkg)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'delete-vendored-zlib + (lambda _ + (delete-file-recursively "src/zlib") + #t))))) + (inputs + `(("pkg-config" ,(@ (gnu packages pkg-config) pkg-config)) + ("zlib" ,(@ (gnu packages compression) zlib)))) (home-page "https://github.com/alexcrichton/libz-sys") (synopsis "Bindings to the system libz library (also known as zlib).") (description @@ -3646,7 +3786,16 @@ implementation (which is unstable / requires nightly).") ("rust-openssl-sys" ,rust-openssl-sys)) #:cargo-development-inputs (("rust-hex" ,rust-hex) - ("rust-tempdir" ,rust-tempdir)))) + ("rust-tempdir" ,rust-tempdir)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-openssl + (lambda* (#:key inputs #:allow-other-keys) + (let ((openssl (assoc-ref inputs "openssl"))) + (setenv "OPENSSL_DIR" openssl)) + #t))))) + (inputs + `(("openssl" ,(@ (gnu packages tls) openssl)))) (home-page "https://github.com/sfackler/rust-openssl") (synopsis "OpenSSL bindings") @@ -3693,14 +3842,25 @@ implementation (which is unstable / requires nightly).") "1f05kxx8mai9ac16x1lk0404bymghbbj7vcbqrfwqfr52w131fmm")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs - (("rust-libc" ,rust-libc)) - #:cargo-development-inputs - (("rust-autocfg" ,rust-autocfg) - ("rust-cc" ,rust-cc) - ("rust-openssl-src" ,rust-openssl-src) - ("rust-pkg-config" ,rust-pkg-config) - ("rust-vcpkg" ,rust-vcpkg)))) + `(#:cargo-inputs + (("rust-autocfg" ,rust-autocfg) + ("rust-libc" ,rust-libc)) + #:cargo-development-inputs + (("rust-autocfg" ,rust-autocfg) + ("rust-cc" ,rust-cc) + ("rust-openssl-src" ,rust-openssl-src) + ("rust-pkg-config" ,rust-pkg-config) + ("rust-vcpkg" ,rust-vcpkg)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'find-openssl + (lambda* (#:key inputs #:allow-other-keys) + (let ((openssl (assoc-ref inputs "openssl"))) + (setenv "OPENSSL_DIR" openssl)) + #t))))) + (inputs + `(("openssl" ,(@ (gnu packages tls) openssl)) + ("pkg-config" ,(@ (gnu packages pkg-config) pkg-config)))) (home-page "https://github.com/sfackler/rust-openssl") (synopsis "FFI bindings to OpenSSL") |