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authorRoel Janssen2016-03-23 14:32:26 +0100
committerRoel Janssen2016-03-23 14:32:26 +0100
commit968df22e894541b5750d857e12e990230bbc35e4 (patch)
treeb8d78653cfbc5afe0933eff15a270df72f76489c /gn/packages/clBLAS.scm
parent2c95c0053a6ffa3339b18a0f585dbb82b555b3e8 (diff)
parentd3418e836947fe307d4dc7b16062a2cfbf562709 (diff)
downloadguix-bioinformatics-968df22e894541b5750d857e12e990230bbc35e4.tar.gz
Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics
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+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gn packages clBLAS)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages bootstrap)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages autotools)
+ #:use-module (gnu packages curl)
+ #:use-module (gnu packages gawk)
+ #:use-module (gnu packages cmake)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages glib)
+ #:use-module (gnu packages image)
+ #:use-module (gnu packages video)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages gl)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages gnupg)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages mpi)
+ #:use-module (gnu packages ruby)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages xorg)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages zip)
+ #:use-module (gnu packages linux))
+
+(define-public clBLAS
+ (package
+ (name "clBLAS")
+ (version "v2.10")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/clMathLibraries/clBLAS/archive/"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0adlb02lqzrklfybhnv4n0p37mvkvdi3vqiwa05x2mv05ywnr93j"))))
+ (build-system cmake-build-system)
+ (arguments `(#:tests? #f
+ #:configure-flags '("../clBLAS-2.10/src" "-DBUILD_SHARED_LIBS=ON" "-DCMAKE_BUILD_TYPE=Release" "-DBUILD_TEST=OFF")))
+ (native-inputs `(("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("cmake" ,cmake)
+ ("gfortran" ,gfortran)
+ ("libtool" ,libtool)
+ ("pkg-config" ,pkg-config)))
+ (inputs `(("curl" ,curl)
+ ("dbus" ,dbus)
+ ("boost" ,boost)
+ ("enca" ,enca)
+ ("eudev" ,eudev)
+ ("fftw-openmpi" ,fftw-openmpi)
+ ("glew" ,glew)
+ ("libcap" ,libcap)
+ ("libjpeg" ,libjpeg)
+ ("libltdl" ,libltdl)
+ ("libtiff" ,libtiff)
+ ("mesa-utils" ,mesa-utils)
+ ("openmpi" ,openmpi)
+ ("ocl-icd" ,ocl-icd)
+ ("opencl-headers" ,opencl-headers)
+ ("randrproto" ,randrproto)
+ ("libxrandr" ,libxrandr)
+ ("xineramaproto" ,xineramaproto)
+ ("libxinerama" ,libxinerama)
+ ("libxcursor" ,libxcursor)
+ ("python" ,python-2)))
+ (home-page "http://www.glfw.org/")
+ (synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
+ (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
+ (license (list license:gpl2))))
+
+(define-public ocl-icd
+ (package
+ (name "ocl-icd")
+ (version "2.2.9")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
+ (inputs `(("zip" ,zip)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("ruby" ,ruby)
+ ("libtool" ,libtool)
+ ("opencl-headers" ,opencl-headers)
+ ("libgcrypt" ,libgcrypt)))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (add-after 'unpack `bootstrap
+ (lambda _
+ (zero? (system* "autoreconf" "-vfi")))))))
+ (home-page "https://forge.imag.fr/projects/ocl-icd/")
+ (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
+ (description "OpenCL implementations are provided as ICD (Installable Client Driver).
+ An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
+ This free ICD Loader can load any (free or non free) ICD")
+ (license (list license:gpl2 license:ruby))))
+
+(define-public opencl-headers
+(let ((commit "c1770dc"))
+ (package
+ (name "opencl-headers")
+ (version (string-append "2.1-" commit ))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
+ (commit commit)))
+ (file-name (string-append name "-" commit))
+ (sha256
+ (base32
+ "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
+ (propagated-inputs '())
+ (inputs '())
+ (native-inputs '())
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (copy-recursively "." (string-append
+ (assoc-ref outputs "out")
+ "/include/CL")))))))
+ (synopsis "The Khronos OpenCL headers")
+ (description "This package provides the Khronos OpenCL headers")
+ (home-page "https://www.khronos.org/registry/cl/")
+ (license (list license:gpl2)))))
+
+