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| author | Efraim Flashner | 2019-08-05 06:01:24 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2019-08-05 06:02:20 -0500 |
| commit | e756c88a8ccf8579b57eb3370d2ccc8cec23b5cd (patch) | |
| tree | 64fbb51fd00868e18501c732f34311f52fb7e79a /gn/packages/bioinformatics.scm | |
| parent | 9d2868360926c0a700cd57fd65fb1ea2b4bf16a1 (diff) | |
| download | guix-bioinformatics-e756c88a8ccf8579b57eb3370d2ccc8cec23b5cd.tar.gz | |
gn: contra: Update package definition.
* gn/packages/bioinformatics.scm (contra)[arguments]: Update custom
'install phase.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 18 |
1 files changed, 8 insertions, 10 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index eb495f9..d6972d6 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -88,18 +88,16 @@ (delete 'configure) (delete 'build) ; We can use Guix's BEDtools instead. (replace 'install - (lambda _ - (let* ((out (assoc-ref %outputs "out")) + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) (doc (string-append out "/share/doc/contra"))) - (mkdir-p bin) - (mkdir-p doc) - (and - (zero? (system* "cp" "--recursive" "scripts" bin)) - (zero? (system* "cp" "contra.py" bin)) - (zero? (system* "cp" "baseline.py" bin)) - ;; There's only a pre-built PDF available. - (zero? (system* "cp" "CONTRA_User_Guide.2.0.pdf" doc))))))))) + (copy-recursively "scripts" (string-append bin "/scripts")) + (install-file "contra.py" bin) + (install-file "baseline.py" bin) + ;; There's only a pre-built PDF available. + (install-file "CONTRA_User_Guide.2.0.pdf" doc)) + #t))))) (home-page "http://contra-cnv.sourceforge.net/") (synopsis "Tool for copy number variation (CNV) detection for targeted resequencing data") |