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authorEfraim Flashner2019-12-10 13:14:29 +0200
committerEfraim Flashner2019-12-10 13:14:29 +0200
commitb2749160d40a4cb0e3eacca3088960030e8da8ac (patch)
tree91baf197ce2158195ad40b7f7fc2bb36bf417a24 /gn/packages/bioinformatics.scm
parent20bcdf1d4ad605f94565846c0af47b2dab2ec4f9 (diff)
downloadguix-bioinformatics-b2749160d40a4cb0e3eacca3088960030e8da8ac.tar.gz
gn: Remove r-qtl2.
This package is now upstream.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
-rw-r--r--gn/packages/bioinformatics.scm30
1 files changed, 0 insertions, 30 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index a96abc2..4f133f8 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -11,7 +11,6 @@
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
- #:use-module (guix build-system r)
#:use-module (guix build-system trivial)
#:use-module (guix build-system waf)
#:use-module (gnu packages)
@@ -1135,32 +1134,3 @@ here}.")
(synopsis "Efficient sequence alignment of full genomes")
(description "MUMmer is a versatil alignment tool for DNA and protein sequences.")
(license license:artistic2.0)))
-
-(define-public r-qtl2
- (package
- (name "r-qtl2")
- (version "0.20")
- (source (origin
- (method git-fetch)
- ;; Not yet available in cran.
- (uri (git-reference
- (url "https://github.com/rqtl/qtl2.git")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0l1asr28q25jzbwrbg5490962sg3y4sjrd0qf09p78ws1aq8vfs0"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-data-table" ,r-data-table)
- ("r-jsonlite" ,r-jsonlite)
- ("r-rcpp" ,r-rcpp)
- ("r-rcppeigen" ,r-rcppeigen)
- ("r-rsqlite" ,r-rsqlite)
- ("r-yaml" ,r-yaml)))
- (home-page "https://kbroman.org/qtl2/")
- (synopsis
- "QTL analysis software for high-dimensional data and complex cross designs")
- (description
- "R/qtl2 (aka qtl2) is a reimplementation of the QTL analysis software
-R/qtl, to better handle high-dimensional data and complex cross designs.")
- (license license:gpl3)))