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| author | Efraim Flashner | 2019-08-21 01:37:01 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2019-08-21 01:37:01 -0500 |
| commit | cb7c4cbfa8a1c83ad8cf230d951c0b7913126c1b (patch) | |
| tree | 2799bac4163ae247e59db5172b8950a82f539b2a /gn/packages/bioinformatics.scm | |
| parent | dd3831e3c5c3c0f2437e3a6e7f96ced93e3379ab (diff) | |
| download | guix-bioinformatics-cb7c4cbfa8a1c83ad8cf230d951c0b7913126c1b.tar.gz | |
gn: edirect-gn: Install missing binary.
* gn/packages/bioinformatics.scm (edirect-gn)[arguments]: Install
missing 'efetch' binary. Sort installed files alphabetically. Substitute
call to 'exec perl' for all potentially affected files.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 31be859..26337d1 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -943,7 +943,7 @@ reads.") "rchive.go" "run-ncbi-converter") (("gunzip") (string-append gzip "/bin/gunzip"))) - (substitute* "efetch" + (substitute* (find-files "." "^e") (("exec perl") "exec")) (substitute* '("xtract" "rchive") ;; or add current directory to PATH @@ -957,9 +957,10 @@ reads.") (for-each (lambda (file) (install-file file bin)) - '("edirect.pl" "archive-pubmed" "pm-prepare" "download-pubmed" - "pm-stash" "pm-refresh" "fetch-pubmed" "xtract" "has-asp" - "asp-ls" "asp-cp" "ftp-ls" "ftp-cp" "rchive" "efetch")) + '("archive-pubmed" "asp-cp" "asp-ls" "download-pubmed" + "edirect.pl" "efetch" "epost" "fetch-pubmed" "ftp-cp" + "ftp-ls" "has-asp" "pm-prepare" "pm-refresh" "pm-stash" + "rchive" "xtract")) (copy-file xtract.linux (string-append bin "/xtract.Linux")) (copy-file rchive.linux (string-append bin "/rchive.Linux")) (chmod (string-append bin "/xtract.Linux") #o555) |