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| author | Efraim Flashner | 2020-05-06 11:58:01 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2020-05-07 20:07:34 +0300 |
| commit | a98639d8aed1cbc5fb6423854f91ba4741ed5603 (patch) | |
| tree | 6214ac892f477b0d1ca9ba6325b525d21196240f /gn/packages/bioinformatics.scm | |
| parent | cf9fe453de66a6bc426d4801f487ea299e250fb8 (diff) | |
| download | guix-bioinformatics-a98639d8aed1cbc5fb6423854f91ba4741ed5603.tar.gz | |
gn: grocsvs upstreamed
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 39 |
1 files changed, 0 insertions, 39 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 056bc3f..0678444 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1141,45 +1141,6 @@ here}.") (description "MUMmer is a versatil alignment tool for DNA and protein sequences.") (license license:artistic2.0))) -(define-public grocsvs - (let ((commit "ecd956a65093a0b2c41849050e4512d46fecea5d") - (revision "1")) - (package - (name "grocsvs") - (version (git-version "0.2.6.1" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/grocsvs/grocsvs") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "14505725gr7qxc17cxxf0k6lzcwmgi64pija4mwf29aw70qn35cc")))) - (build-system python-build-system) - (arguments - `(#:python ,python-2)) ; Only python-2 supported. - (inputs - `(("python2-admiral" ,python2-admiral) - ("python2-h5py" ,python2-h5py) - ("python2-ipython-cluster-helper" ,python2-ipython-cluster-helper) - ("python2-networkx" ,python2-networkx) - ("python2-psutil" ,python2-psutil) - ("python2-pandas" ,python2-pandas) - ("python2-pybedtools" ,python2-pybedtools) - ("python2-pyfaidx" ,python2-pyfaidx) - ("python2-pygraphviz" ,python2-pygraphviz) - ("python2-pysam" ,python2-pysam) - ("python2-scipy" ,python2-scipy))) - (home-page "https://github.com/grocsvs/grocsvs") - (synopsis "Genome-wide reconstruction of complex structural variants") - (description - "@dfn{Genome-wide Reconstruction of Complex Structural Variants} -(GROC-SVs), is a software pipeline for identifying large-scale structural -variants, performing sequence assembly at the breakpoints, and reconstructing -the complex structural variants using the long-fragment information from the -10x Genomics platform.") - (license license:expat)))) - (define-public diagnostic-slider (let ((commit "514d65d4982133e4869e578c5553fced4c6d506c") (revision "1")) |