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authorEfraim Flashner2021-08-11 13:37:04 +0300
committerEfraim Flashner2021-08-11 13:37:04 +0300
commit08d32dfa56d5f4854be9859827844879603447a8 (patch)
tree842b0d5044e1101d187964343a67833be7db9d8d /gn/packages/bioinformatics.scm
parent4de2b7e3fad083d0ed488662fc624c370d45485a (diff)
downloadguix-bioinformatics-08d32dfa56d5f4854be9859827844879603447a8.tar.gz
gn: Add pbsim2.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
-rw-r--r--gn/packages/bioinformatics.scm22
1 files changed, 22 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 35fadc7..8bb4e80 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -545,6 +545,28 @@ can be found @url{https://www.biorxiv.org/content/10.1101/2020.11.11.378133v1,
here}.")
(license license:expat))))
+(define-public pbsim2
+ (let ((commit "e71f7892aea0bd3c963b4f1f5628db4f830ee475") ; Dec 2, 2020
+ (revision "1"))
+ (package
+ (name "pbsim2")
+ (version (git-version "0.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/yukiteruono/pbsim2")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "13d3mhdp3rs58w14j9a5sbda4q8k9vzic7rgfa8223m7cm5ih6y7"))))
+ (build-system gnu-build-system)
+ (home-page "https://github.com/yukiteruono/pbsim2")
+ (synopsis "Simulator for long read sequencers")
+ (description "PBSIM simulates @acronym{Continuous Long Reads, CLRs} of
+PacBio, and Nanopore reads. In it sampling-based and model-based simulations
+are implemented.")
+ (license license:gpl2))))
+
;; TODO: Unbundle zlib, bamtools, tclap
(define-public sniffles
(package