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authorPjotr Prins2015-09-18 12:51:15 +0900
committerPjotr Prins2015-09-18 12:51:15 +0900
commitfebf6e8cf48dea8ea4fa88ce8575f0a3aa8a95d4 (patch)
tree9dc42cd9f97666f47090a14d0f8c3a900bf3ab1c /gn/packages/bioinformatics.scm
parentd2e6a4c4d5214d870f0e37be05df3795164091db (diff)
downloadguix-bioinformatics-febf6e8cf48dea8ea4fa88ce8575f0a3aa8a95d4.tar.gz
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+;; Bioinformatics module
+
+(define-module (gn packages bioinformatics)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix utils)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix build-system perl)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system ruby)
+ #:use-module (guix build-system r)
+ #:use-module (guix build-system trivial)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages boost)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages cpio)
+ #:use-module (gnu packages file)
+ #:use-module (gnu packages java)
+ #:use-module (gnu packages linux)
+ #:use-module (gnu packages machine-learning)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages ncurses)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages ruby)
+ #:use-module (gnu packages statistics)
+ #:use-module (gnu packages tbb)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages vim)
+ #:use-module (gnu packages web)
+ #:use-module (gnu packages xml)
+ #:use-module (gnu packages zip)
+ #:use-module (srfi srfi-1))
+
+(define-public r-qtl
+ (package
+ (name "r-qtl")
+ (version "1.37-11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "mirror://cran/src/contrib/qtl_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi"))))
+ (build-system r-build-system)
+ (home-page "http://www.rqtl.org")
+ (synopsis "Tools for Analyzing QTL Experiments")
+ (description "Bio-statistics library for analysis of experimental
+crosses to identify genes (called quantitative trait loci, QTLs)
+contributing to variation in quantitative traits.")
+ (license license:gpl3+)))