diff options
| author | pjotrp | 2016-09-29 08:51:42 +0000 |
|---|---|---|
| committer | pjotrp | 2016-09-29 08:51:42 +0000 |
| commit | 9351ff09f6ac8c557ce3e847518f04f281e7b3dc (patch) | |
| tree | d21e302bdd7c1dc6dfc52206c843e415d72ddc43 /gn/packages/bioinformatics.scm | |
| parent | e73d1d766905b5f98f68d1799a88a3b86c1ff9f9 (diff) | |
| download | guix-bioinformatics-9351ff09f6ac8c557ce3e847518f04f281e7b3dc.tar.gz | |
Move qtlreaper to genenetwork.scm
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 35 |
1 files changed, 0 insertions, 35 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index f62949d..b509fc3 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -772,41 +772,6 @@ to sample traits. Also includes a number of utility functions for data manipulation and visualization.") (license license:gpl2+)))) -(define-public qtlreaper - (package - (name "qtlreaper") - (version "1.1.1") - (source - (origin - (method url-fetch) - (uri (string-append - "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz" - ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb")) - )) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x")))) - (build-system python-build-system) - ;; (native-inputs - ;; `(("python-setuptools" ,python-setuptools))) - (arguments - `(#:python ,python-2 - #:tests? #f)) ; no 'setup.py test' - (home-page "http://qtlreaper.sourceforge.net/") - (synopsis "Tool for scanning expression data for QTLs") - (description - "It is essentially the batch-oriented version of WebQTL. It -requires, as input, expression data from members of a set of -recombinant inbred lines and genotype information for the same -lines. It searches for an association between each expression trait -and all genotypes and evaluates that association by a permutation -test. For the permutation test, it performs only as many permutations -as are necessary to define the empirical P-value to a reasonable -precision. It also performs bootstrap resampling to estimate the -confidence region for the location of a putative QTL.") - (license license:gpl2+))) - (define-public plink2 (package (name "plink2") |