diff options
| author | Roel Janssen | 2016-02-23 23:31:57 +0100 |
|---|---|---|
| committer | Roel Janssen | 2016-02-23 23:31:57 +0100 |
| commit | 91f6f758f40f3eeba656aa5fb7e9c1f67d38978f (patch) | |
| tree | 579ff99481f51de84e39de51f0192ec5a3c4f9eb /gn/packages/bioinformatics.scm | |
| parent | 609d1a24c9700b8de72ddba4d5b8f091e4bd0828 (diff) | |
| download | guix-bioinformatics-91f6f758f40f3eeba656aa5fb7e9c1f67d38978f.tar.gz | |
Latest Sambamba. Link failure.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 12 |
1 files changed, 10 insertions, 2 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 3363ea2..90da815 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -310,7 +310,9 @@ minimize the amount of work necessary. Unlike make, rdmd tracks dependencies and freshness without requiring additional information from the user.") (license license:boost1.0)))) + (define-public sambamba + ;;(let ((commit "8fe1bda92423c7c97a52ef81c6871fd6569fd1da")) (let ((commit "2ca5a2dbac5ab90c3b4c588519edc3edcb71df84")) (package (name "sambamba") @@ -319,11 +321,14 @@ and freshness without requiring additional information from the user.") (method git-fetch) (uri (git-reference (url "https://github.com/pjotrp/sambamba.git") + ;;(url "https://github.com/roelj/sambamba.git") (commit commit))) (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5")))) + "1f14wn9aaxwjkmla6pzq3s28741carbr2v0fd2v2mm1dcpwnrqz5" + ;;"14gx0hhn039xhgkf5hbvffn9d0ld4zn9ka2zvvdi16k441sc8wjh" + )))) (build-system gnu-build-system) ;; (inputs ;; `(("ldc" ,ldc) @@ -395,7 +400,10 @@ and freshness without requiring additional information from the user.") (replace 'build (lambda* (#:key inputs make-flags #:allow-other-keys) - (zero? (system* "make" "-f" "Makefile.guix" "CC=gcc" "D_COMPILER=ldc2"))))))) + (zero? (system* "make" "-f" "Makefile.guix" "CC=gcc" + "D_COMPILER=ldc2" + (string-append "LDC_LIB_PATH=" + (assoc-ref inputs "ldc") "/lib")))))))) (home-page "https://github.com/lomereiter/sambamba") (synopsis "A tool for working with SAM and BAM files written in D.") (description |