diff options
| author | Efraim Flashner | 2022-06-07 22:28:28 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2022-06-07 22:28:28 +0300 |
| commit | 30e50263e965648d1236ad2b20a374ff89d5b151 (patch) | |
| tree | 613a644d8219d29c8426303ac87986971ac353ae /gn/packages/bioinformatics.scm | |
| parent | 6642ad1162d80399649e7d2657f31e947bf7de84 (diff) | |
| download | guix-bioinformatics-30e50263e965648d1236ad2b20a374ff89d5b151.tar.gz | |
gn: hap.py: Add previously missing inputs.
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 8 |
1 files changed, 3 insertions, 5 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index 05ffb99..702f3e6 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2425,7 +2425,7 @@ cases include: (for-each (lambda (file) (wrap-script file - `("PYTHONPATH" ":" prefix (,(getenv "PYTHONPATH"))) + `("GUIX_PYTHONPATH" ":" prefix (,(getenv "GUIX_PYTHONPATH"))) `("PATH" ":" prefix (,(string-append bcftools "/bin") ,(string-append samtools "/bin"))))) (find-files (string-append out "/bin") "\\.py$")) @@ -2439,10 +2439,8 @@ cases include: ("python" ,python-2) ("python2-bx-python" ,python2-bx-python) ("python2-numpy" ,python2-numpy) - - ;; TODO: re-package these! - ;("python2-pandas" ,python2-pandas) - ;("python2-pysam" ,python2-pysam) + ("python2-pandas" ,python2-pandas) + ("python2-pysam" ,(python2-package python-pysam)) ("python2-scipy" ,python2-scipy) ("rtg-tools" ,rtg-tools) ("samtools" ,samtools) |