diff options
| author | pjotrp | 2016-02-14 15:47:37 +0000 |
|---|---|---|
| committer | pjotrp | 2016-02-14 15:47:37 +0000 |
| commit | 69080d41172a67e0a356634e094f6e32aadccaf2 (patch) | |
| tree | e175f27928cf7cc3063eefcb058796ecc733ef5c /gn/packages/bioinformatics.scm | |
| parent | 949a3b406233e43f7889d2486b4446c2414ed060 (diff) | |
| download | guix-bioinformatics-69080d41172a67e0a356634e094f6e32aadccaf2.tar.gz | |
plink2 installs with patched Makefile
Diffstat (limited to 'gn/packages/bioinformatics.scm')
| -rw-r--r-- | gn/packages/bioinformatics.scm | 20 |
1 files changed, 9 insertions, 11 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index f30266d..2f588d8 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -22,6 +22,7 @@ #:use-module (gnu packages databases) #:use-module (gnu packages cpio) #:use-module (gnu packages file) + #:use-module (gnu packages gcc) #:use-module (gnu packages graphviz) #:use-module (gnu packages java) #:use-module (gnu packages linux) @@ -173,30 +174,27 @@ confidence region for the location of a putative QTL.") (patches (list (search-patch "plink-ng-Makefile-zlib.patch"))))) (build-system gnu-build-system) (arguments - '(#:tests? #t ;no "check" target - #:make-flags (list (string-append "LIB_LAPACK=" - (assoc-ref %build-inputs "lapack") - "/lib/liblapack.so") - "WITH_LAPACK=1" - "FORCE_DYNAMIC=1" - ;; disable phoning home - "WITH_WEBCHECK=") + '(#:tests? #f ;no "check" target #:phases (modify-phases %standard-phases (delete 'configure) (replace 'build (lambda _ - (system* "make" "-f" "Makefile.std") + (zero? (system* "make" "-f" "Makefile.std")) )) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (install-file "plink" bin) + (install-file "plink2" bin) #t)))))) (inputs `(("zlib" ,zlib) - ("lapack" ,lapack))) + ("openblas" ,openblas) + ("atlas" ,atlas) + ("lapack" ,lapack) + ("gfortran" ,gfortran) + )) (native-inputs `(("unzip" ,unzip))) (home-page "https://www.cog-genomics.org/plink2") |