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authorEfraim Flashner2020-04-10 07:00:06 -0500
committerEfraim Flashner2020-04-10 08:46:44 -0500
commitc91739a73f438a1fbf63669b93fd8e7a4bf83b32 (patch)
tree65628678365174fa6e58bf90da38ed0caf5bbeb9 /gn/packages/bioinformatics.scm
parentba6cc50345c46463cb3dda0842cd85015a2b20e9 (diff)
downloadguix-bioinformatics-c91739a73f438a1fbf63669b93fd8e7a4bf83b32.tar.gz
gn: Add diagnostic-slider
Diffstat (limited to 'gn/packages/bioinformatics.scm')
-rw-r--r--gn/packages/bioinformatics.scm51
1 files changed, 51 insertions, 0 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index 78a55fc..3e276af 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -1175,3 +1175,54 @@ variants, performing sequence assembly at the breakpoints, and reconstructing
the complex structural variants using the long-fragment information from the
10x Genomics platform.")
(license license:expat))))
+
+(define-public diagnostic-slider
+ (let ((commit "514d65d4982133e4869e578c5553fced4c6d506c")
+ (revision "1"))
+ (package
+ (name "diagnostic-slider")
+ (version (git-version "0.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/sens/diagnostic-slider")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "04g8if32g8syg6v0bd3jjn05i3d394nx8i3ccl0883p8mlmdvlmx"))))
+ (build-system trivial-build-system)
+ (arguments
+ `(#:modules ((guix build utils))
+ #:builder
+ (begin
+ (use-modules (guix build utils))
+ (let* ((out (assoc-ref %outputs "out"))
+ (targetdir (string-append out "/share/" ,name))
+ (app (string-append out "/bin/" ,name))
+ (Rbin (string-append (assoc-ref %build-inputs "r-min")
+ "/bin/Rscript"))
+ (source (assoc-ref %build-inputs "source")))
+ (copy-recursively source targetdir)
+ (mkdir-p (string-append out "/bin"))
+ (call-with-output-file app
+ (lambda (port)
+ (format port
+"#!~a
+library(shiny)
+setwd(\"~a\")
+runApp(launch.browser=0, port=4206)~%\n"
+ Rbin targetdir)))
+ (chmod app #o555)
+ #t))))
+ (native-inputs
+ `(("source" ,source)))
+ (inputs
+ `(("r-min" ,r-minimal)))
+ (propagated-inputs
+ `(("r" ,r)
+ ("r-shiny" ,r-shiny)))
+ (home-page "https://github.com/sens/diagnostic-slider")
+ (synopsis "")
+ (description
+ "")
+ (license #f))))