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authorpjotrp2016-03-18 21:16:42 -0500
committerpjotrp2016-03-18 21:16:42 -0500
commit364d11268ecea6bf31a48a7942b4c599dc386212 (patch)
treee880fafdea9c4e0f138dc1dea5e0cab532b4265a /gn/packages/arrayfire.scm
parent520fb0f8ef40589738123f0129ccc34e1c756c9e (diff)
parentda665e5a94c59ff4cab6c7f3b88c102a3d15c968 (diff)
downloadguix-bioinformatics-364d11268ecea6bf31a48a7942b4c599dc386212.tar.gz
Mereg
Diffstat (limited to 'gn/packages/arrayfire.scm')
-rw-r--r--gn/packages/arrayfire.scm216
1 files changed, 127 insertions, 89 deletions
diff --git a/gn/packages/arrayfire.scm b/gn/packages/arrayfire.scm
index 5869a88..21c1895 100644
--- a/gn/packages/arrayfire.scm
+++ b/gn/packages/arrayfire.scm
@@ -18,12 +18,16 @@
(define-module (gn packages arrayfire)
#:use-module (guix packages)
+ #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
- #:use-module (guix licenses)
+ #:use-module (gnu packages)
+ #:use-module (guix utils)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
+ #:use-module (gnu packages bootstrap)
#:use-module (gnu packages curl)
#:use-module (gnu packages gawk)
#:use-module (gnu packages cmake)
@@ -31,155 +35,189 @@
#:use-module (gnu packages glib)
#:use-module (gnu packages image)
#:use-module (gnu packages video)
- #:use-module (gnu packages tls)
#:use-module (gnu packages textutils)
;; #:use-module (gnu packages fftw)
;; #:use-module (gnu packages fftw-openmpi) - in algebra
;; #:use-module (gnu packages fftwf)
#:use-module (gnu packages gl)
- #:use-module (gnu packages glew)
+ #:use-module (gnu packages gnupg)
#:use-module (gnu packages pkg-config)
- #:use-module (gnu packages mesa)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages web)
+ #:use-module (gnu packages wget)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages ruby)
+ #:use-module (gnu packages xorg)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages zip)
#:use-module (gnu packages linux))
(define-public arrayfire
- (package
+(package
(name "arrayfire")
- (version "v3.3.alpha")
+ (version "3.3.1")
(source (origin
(method url-fetch)
- (uri (string-append "https://github.com/arrayfire/arrayfire/archive/" version
- ".tar.gz"))
+ (uri (string-append "http://arrayfire.com/arrayfire_source/arrayfire-full-" version
+ ".tar.bz2"))
+ (file-name (string-append name "-" version ".tar.bz2"))
(sha256
(base32
- "0rla0mi5wby8bkpzrj063y6js3d4dlfl3qwfvm8m8skfc21dz52p"))))
- (build-system cmake-build-system)
- (arguments `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release -DBUILD_OPENCL=ON")))
- (native-inputs
- `(("autoconf" ,autoconf)
+ "045adww6dqmyz6kkfmq7xawi5v9a894yp5j9pzn6j568gi48pyqc"))))
+ (native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)
- ("cmake" ,cmake)
- ("doxygen" ,doxygen)
("gawk" ,gawk)
- ("gettext" ,gnu-gettext)
- ("icedtea7" ,icedtea7)
+ ("git" ,git)
+ ("glew" ,glew)
("libtool" ,libtool)
- ("pkg-config" ,pkg-config)
- ("swig" ,swig)
- ("which" ,which)
- ("yasm" ,yasm)))
- (inputs
- `(("boost" ,boost)
- ("bzip2" ,bzip2)
+ ("pkg-config" ,pkg-config)))
+ (inputs `(("boost" ,boost)
("glfw" ,glfw)
("curl" ,curl)
+ ("atlas" ,atlas)
("dbus" ,dbus)
+ ("opencl-headers" ,opencl-headers)
+ ("ocl-icd" ,ocl-icd)
("enca" ,enca)
("eudev" ,eudev)
- ("fontconfig" ,fontconfig)
- ("freetype" ,freetype)
- ("fribidi" ,fribidi)
("glew" ,glew)
- ("gnutls" ,gnutls)
- ("gperf" ,gperf)
+ ("glib" ,glib)
+ ("lapack" ,lapack)
+ ("scalapack" ,scalapack)
("libcap" ,libcap)
- ("libgcrypt" ,libgcrypt)
("libjpeg" ,libjpeg)
("libltdl" ,libltdl)
- ("libssh" ,libssh)
("libtiff" ,libtiff)
- ("libxml2" ,libxml2)
- ("libxmu" ,libxmu)
- ("libxrandr" ,libxrandr)
- ("libxrender" ,libxrender)
- ("libxslt" ,libxslt)
- ("libxt" ,libxt)
("libyajl" ,libyajl)
- ("lzo" ,lzo)
("mesa-utils" ,mesa-utils)
- ("mysql" ,mysql)
- ("openssl" ,openssl)
- ("pcre" ,pcre)
("python" ,python-2)
- ("tinyxml" ,tinyxml)
- ("unzip" ,unzip)
- ("zip" ,zip)
("freeimage" ,freeimage)
+ ("freeglut" ,freeglut)
("fftw" ,fftw)
("fftwf" ,fftwf)
("fftw-openmpi" ,fftw-openmpi)
- ("atlas" ,atlas)
- ("gfortran", gfortran)
("glew" ,glew)
("glu" ,glu)
- ("libx11" ,libx11)
- ("libxi" ,libxi)
- ("libxrandr" ,libxrandr)
- ("libxxf86vm" ,libxxf86vm)
- ("inputproto" ,inputproto)
- ("glproto" ,glproto)
- ("zlib" ,zlib)))
+ ("openblas" ,openblas)
+ ("wget" ,wget)
+ ("cmake" ,cmake)))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags '("-DBUILD_OPENCL=OFF" "-DBUILD_CUDA=OFF" "-DBUILD_GRAPHICS=OFF")
+ #:tests? #f))
(synopsis "ArrayFire: a general purpose GPU library. https://arrayfire.com")
(description "ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming simple.")
(home-page "http://arrayfire.com/")
- (license gpl3+)))
+ (license (list license:gpl2
+ license:gpl2+
+ license:gpl3
+ license:gpl3+))))
(define-public glfw
(package
(name "glfw")
- (version "3.0.4")
+ (version "3.1.2")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/glfw/glfw/archive/"
- version ".zip"))
- (file-name (string-append name "-" version ".zip"))
+ version ".tar.gz"))
(sha256
(base32
- "1g0jm80cakk60477zz9z1mpsznxaadsfm318yiigf6kackrkqfqg"))))
- (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON")))
- (native-inputs
- `(("autoconf" ,autoconf)
+ "08pixv8hd5xsccf7l8cqcijjqaq4k4da8qbp77wggal2fq445ika"))))
+ (build-system cmake-build-system)
+ (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON")
+ #:tests? #f))
+ (native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)
("cmake" ,cmake)
+ ("git" ,git)
("libtool" ,libtool)
+ ("libpthread-stubs" ,libpthread-stubs)
("pkg-config" ,pkg-config)))
- (inputs
- `(("bzip2" ,bzip2)
- ("curl" ,curl)
+ (inputs `(("curl" ,curl)
("dbus" ,dbus)
("enca" ,enca)
("eudev" ,eudev)
- ("fontconfig" ,fontconfig)
- ("freetype" ,freetype)
- ("fribidi" ,fribidi)
("glew" ,glew)
- ("gnutls" ,gnutls)
- ("gperf" ,gperf)
("libcap" ,libcap)
- ("libgcrypt" ,libgcrypt)
("libjpeg" ,libjpeg)
("libltdl" ,libltdl)
- ("libssh" ,libssh)
("libtiff" ,libtiff)
- ("libxml2" ,libxml2)
- ("libxmu" ,libxmu)
- ("libxrandr" ,libxrandr)
- ("libxrender" ,libxrender)
- ("libxslt" ,libxslt)
- ("libxt" ,libxt)
- ("lzo" ,lzo)
("mesa-utils" ,mesa-utils)
- ("mysql" ,mysql)
- ("openssl" ,openssl)
- ("python" ,python-2)
- ("tinyxml" ,tinyxml)
- ("unzip" ,unzip)
- ("zip" ,zip)
- ("zlib" ,zlib)))
+ ("randrproto" ,randrproto)
+ ("libxrandr" ,libxrandr)
+ ("xineramaproto" ,xineramaproto)
+ ("libxinerama" ,libxinerama)
+ ("libxcursor" ,libxcursor)
+ ("python" ,python-2)))
(home-page "http://www.glfw.org/")
(synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
- (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events. It is easy to integrate into existing applications and does not lay claim to the main loop.
-GLFW is written in C and has native support for Windows, OS X and many Unix-like systems using the X Window System, such as Linux and FreeBSD.
-GLFW is licensed under the zlib/libpng license.")
- (license license:gpl2+)))
+ (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
+ (license (list license:gpl2))))
+
+(define-public ocl-icd
+ (package
+ (name "ocl-icd")
+ (version "2.2.9")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
+ (inputs `(("zip" ,zip)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("ruby" ,ruby)
+ ("libtool" ,libtool)
+ ("opencl-headers" ,opencl-headers)
+ ("libgcrypt" ,libgcrypt)))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (add-after 'unpack `bootstrap
+ (lambda _
+ (zero? (system* "autoreconf" "-vfi")))))))
+ (home-page "https://forge.imag.fr/projects/ocl-icd/")
+ (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
+ (description "OpenCL implementations are provided as ICD (Installable Client Driver).
+ An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
+ This free ICD Loader can load any (free or non free) ICD")
+ (license (list license:gpl2 license:ruby))))
+
+(define-public opencl-headers
+(let ((commit "c1770dc"))
+ (package
+ (name "opencl-headers")
+ (version (string-append "2.1-" commit ))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
+ (commit commit)))
+ (file-name (string-append name "-" commit))
+ (sha256
+ (base32
+ "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
+ (propagated-inputs '())
+ (inputs '())
+ (native-inputs '())
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (copy-recursively "." (string-append
+ (assoc-ref outputs "out")
+ "/include/CL")))))))
+ (synopsis "The Khronos OpenCL headers")
+ (description "This package provides the Khronos OpenCL headers")
+ (home-page "https://www.khronos.org/registry/cl/")
+ (license (list license:gpl2)))))
+