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author | pjotrp | 2016-03-18 21:16:42 -0500 |
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committer | pjotrp | 2016-03-18 21:16:42 -0500 |
commit | 364d11268ecea6bf31a48a7942b4c599dc386212 (patch) | |
tree | e880fafdea9c4e0f138dc1dea5e0cab532b4265a /gn/packages/arrayfire.scm | |
parent | 520fb0f8ef40589738123f0129ccc34e1c756c9e (diff) | |
parent | da665e5a94c59ff4cab6c7f3b88c102a3d15c968 (diff) | |
download | guix-bioinformatics-364d11268ecea6bf31a48a7942b4c599dc386212.tar.gz |
Mereg
Diffstat (limited to 'gn/packages/arrayfire.scm')
-rw-r--r-- | gn/packages/arrayfire.scm | 216 |
1 files changed, 127 insertions, 89 deletions
diff --git a/gn/packages/arrayfire.scm b/gn/packages/arrayfire.scm index 5869a88..21c1895 100644 --- a/gn/packages/arrayfire.scm +++ b/gn/packages/arrayfire.scm @@ -18,12 +18,16 @@ (define-module (gn packages arrayfire) #:use-module (guix packages) + #:use-module ((guix licenses) #:prefix license:) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (guix build-system cmake) - #:use-module (guix licenses) + #:use-module (gnu packages) + #:use-module (guix utils) #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) + #:use-module (gnu packages bootstrap) #:use-module (gnu packages curl) #:use-module (gnu packages gawk) #:use-module (gnu packages cmake) @@ -31,155 +35,189 @@ #:use-module (gnu packages glib) #:use-module (gnu packages image) #:use-module (gnu packages video) - #:use-module (gnu packages tls) #:use-module (gnu packages textutils) ;; #:use-module (gnu packages fftw) ;; #:use-module (gnu packages fftw-openmpi) - in algebra ;; #:use-module (gnu packages fftwf) #:use-module (gnu packages gl) - #:use-module (gnu packages glew) + #:use-module (gnu packages gnupg) #:use-module (gnu packages pkg-config) - #:use-module (gnu packages mesa) + #:use-module (gnu packages maths) #:use-module (gnu packages web) + #:use-module (gnu packages wget) + #:use-module (gnu packages python) + #:use-module (gnu packages ruby) + #:use-module (gnu packages xorg) + #:use-module (gnu packages version-control) + #:use-module (gnu packages zip) #:use-module (gnu packages linux)) (define-public arrayfire - (package +(package (name "arrayfire") - (version "v3.3.alpha") + (version "3.3.1") (source (origin (method url-fetch) - (uri (string-append "https://github.com/arrayfire/arrayfire/archive/" version - ".tar.gz")) + (uri (string-append "http://arrayfire.com/arrayfire_source/arrayfire-full-" version + ".tar.bz2")) + (file-name (string-append name "-" version ".tar.bz2")) (sha256 (base32 - "0rla0mi5wby8bkpzrj063y6js3d4dlfl3qwfvm8m8skfc21dz52p")))) - (build-system cmake-build-system) - (arguments `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release -DBUILD_OPENCL=ON"))) - (native-inputs - `(("autoconf" ,autoconf) + "045adww6dqmyz6kkfmq7xawi5v9a894yp5j9pzn6j568gi48pyqc")))) + (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) - ("cmake" ,cmake) - ("doxygen" ,doxygen) ("gawk" ,gawk) - ("gettext" ,gnu-gettext) - ("icedtea7" ,icedtea7) + ("git" ,git) + ("glew" ,glew) ("libtool" ,libtool) - ("pkg-config" ,pkg-config) - ("swig" ,swig) - ("which" ,which) - ("yasm" ,yasm))) - (inputs - `(("boost" ,boost) - ("bzip2" ,bzip2) + ("pkg-config" ,pkg-config))) + (inputs `(("boost" ,boost) ("glfw" ,glfw) ("curl" ,curl) + ("atlas" ,atlas) ("dbus" ,dbus) + ("opencl-headers" ,opencl-headers) + ("ocl-icd" ,ocl-icd) ("enca" ,enca) ("eudev" ,eudev) - ("fontconfig" ,fontconfig) - ("freetype" ,freetype) - ("fribidi" ,fribidi) ("glew" ,glew) - ("gnutls" ,gnutls) - ("gperf" ,gperf) + ("glib" ,glib) + ("lapack" ,lapack) + ("scalapack" ,scalapack) ("libcap" ,libcap) - ("libgcrypt" ,libgcrypt) ("libjpeg" ,libjpeg) ("libltdl" ,libltdl) - ("libssh" ,libssh) ("libtiff" ,libtiff) - ("libxml2" ,libxml2) - ("libxmu" ,libxmu) - ("libxrandr" ,libxrandr) - ("libxrender" ,libxrender) - ("libxslt" ,libxslt) - ("libxt" ,libxt) ("libyajl" ,libyajl) - ("lzo" ,lzo) ("mesa-utils" ,mesa-utils) - ("mysql" ,mysql) - ("openssl" ,openssl) - ("pcre" ,pcre) ("python" ,python-2) - ("tinyxml" ,tinyxml) - ("unzip" ,unzip) - ("zip" ,zip) ("freeimage" ,freeimage) + ("freeglut" ,freeglut) ("fftw" ,fftw) ("fftwf" ,fftwf) ("fftw-openmpi" ,fftw-openmpi) - ("atlas" ,atlas) - ("gfortran", gfortran) ("glew" ,glew) ("glu" ,glu) - ("libx11" ,libx11) - ("libxi" ,libxi) - ("libxrandr" ,libxrandr) - ("libxxf86vm" ,libxxf86vm) - ("inputproto" ,inputproto) - ("glproto" ,glproto) - ("zlib" ,zlib))) + ("openblas" ,openblas) + ("wget" ,wget) + ("cmake" ,cmake))) + (build-system cmake-build-system) + (arguments + `(#:configure-flags '("-DBUILD_OPENCL=OFF" "-DBUILD_CUDA=OFF" "-DBUILD_GRAPHICS=OFF") + #:tests? #f)) (synopsis "ArrayFire: a general purpose GPU library. https://arrayfire.com") (description "ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming simple.") (home-page "http://arrayfire.com/") - (license gpl3+))) + (license (list license:gpl2 + license:gpl2+ + license:gpl3 + license:gpl3+)))) (define-public glfw (package (name "glfw") - (version "3.0.4") + (version "3.1.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/glfw/glfw/archive/" - version ".zip")) - (file-name (string-append name "-" version ".zip")) + version ".tar.gz")) (sha256 (base32 - "1g0jm80cakk60477zz9z1mpsznxaadsfm318yiigf6kackrkqfqg")))) - (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON"))) - (native-inputs - `(("autoconf" ,autoconf) + "08pixv8hd5xsccf7l8cqcijjqaq4k4da8qbp77wggal2fq445ika")))) + (build-system cmake-build-system) + (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS=ON") + #:tests? #f)) + (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) ("cmake" ,cmake) + ("git" ,git) ("libtool" ,libtool) + ("libpthread-stubs" ,libpthread-stubs) ("pkg-config" ,pkg-config))) - (inputs - `(("bzip2" ,bzip2) - ("curl" ,curl) + (inputs `(("curl" ,curl) ("dbus" ,dbus) ("enca" ,enca) ("eudev" ,eudev) - ("fontconfig" ,fontconfig) - ("freetype" ,freetype) - ("fribidi" ,fribidi) ("glew" ,glew) - ("gnutls" ,gnutls) - ("gperf" ,gperf) ("libcap" ,libcap) - ("libgcrypt" ,libgcrypt) ("libjpeg" ,libjpeg) ("libltdl" ,libltdl) - ("libssh" ,libssh) ("libtiff" ,libtiff) - ("libxml2" ,libxml2) - ("libxmu" ,libxmu) - ("libxrandr" ,libxrandr) - ("libxrender" ,libxrender) - ("libxslt" ,libxslt) - ("libxt" ,libxt) - ("lzo" ,lzo) ("mesa-utils" ,mesa-utils) - ("mysql" ,mysql) - ("openssl" ,openssl) - ("python" ,python-2) - ("tinyxml" ,tinyxml) - ("unzip" ,unzip) - ("zip" ,zip) - ("zlib" ,zlib))) + ("randrproto" ,randrproto) + ("libxrandr" ,libxrandr) + ("xineramaproto" ,xineramaproto) + ("libxinerama" ,libxinerama) + ("libxcursor" ,libxcursor) + ("python" ,python-2))) (home-page "http://www.glfw.org/") (synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.") - (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events. It is easy to integrate into existing applications and does not lay claim to the main loop. -GLFW is written in C and has native support for Windows, OS X and many Unix-like systems using the X Window System, such as Linux and FreeBSD. -GLFW is licensed under the zlib/libpng license.") - (license license:gpl2+))) + (description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.") + (license (list license:gpl2)))) + +(define-public ocl-icd + (package + (name "ocl-icd") + (version "2.2.9") + (source (origin + (method url-fetch) + (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc")))) + (inputs `(("zip" ,zip) + ("autoconf" ,autoconf) + ("automake" ,automake) + ("ruby" ,ruby) + ("libtool" ,libtool) + ("opencl-headers" ,opencl-headers) + ("libgcrypt" ,libgcrypt))) + (build-system gnu-build-system) + (arguments + '(#:phases (modify-phases %standard-phases + (add-after 'unpack `bootstrap + (lambda _ + (zero? (system* "autoreconf" "-vfi"))))))) + (home-page "https://forge.imag.fr/projects/ocl-icd/") + (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).") + (description "OpenCL implementations are provided as ICD (Installable Client Driver). + An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project. + This free ICD Loader can load any (free or non free) ICD") + (license (list license:gpl2 license:ruby)))) + +(define-public opencl-headers +(let ((commit "c1770dc")) + (package + (name "opencl-headers") + (version (string-append "2.1-" commit )) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/KhronosGroup/OpenCL-Headers.git") + (commit commit))) + (file-name (string-append name "-" commit)) + (sha256 + (base32 + "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck")))) + (propagated-inputs '()) + (inputs '()) + (native-inputs '()) + (build-system gnu-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (delete 'configure) + (delete 'build) + (delete 'check) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (copy-recursively "." (string-append + (assoc-ref outputs "out") + "/include/CL"))))))) + (synopsis "The Khronos OpenCL headers") + (description "This package provides the Khronos OpenCL headers") + (home-page "https://www.khronos.org/registry/cl/") + (license (list license:gpl2))))) + |