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authorDennis E. Mungai2016-03-18 05:21:29 +0300
committerDennis E. Mungai2016-03-18 05:21:29 +0300
commitf35792af6aed186484bce9a361b8d2bc1116161b (patch)
tree4219cdc365de508048cdb51cdc1134de13f0a991 /gn/packages/arrayfire.scm
parent88b8a6c91c482b419e6a36301d7b84745c19157f (diff)
downloadguix-bioinformatics-f35792af6aed186484bce9a361b8d2bc1116161b.tar.gz
Bump version to v3.3.3
Also change licensing schema with #prefix (es). Solves namespace problems. Also added wget as an input (As it's needed as a fallback incase checksums for Boost are invalid).
Diffstat (limited to 'gn/packages/arrayfire.scm')
-rw-r--r--gn/packages/arrayfire.scm99
1 files changed, 89 insertions, 10 deletions
diff --git a/gn/packages/arrayfire.scm b/gn/packages/arrayfire.scm
index 7756a97..b94a0ac 100644
--- a/gn/packages/arrayfire.scm
+++ b/gn/packages/arrayfire.scm
@@ -17,14 +17,17 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gn packages arrayfire)
- #:use-module ((guix licenses))
+ #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (guix packages)
+ #:use-module (gnu packages)
+ #:use-module (guix utils)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
+ #:use-module (gnu packages bootstrap)
#:use-module (gnu packages curl)
#:use-module (gnu packages gawk)
#:use-module (gnu packages cmake)
@@ -34,20 +37,23 @@
#:use-module (gnu packages video)
#:use-module (gnu packages textutils)
#:use-module (gnu packages gl)
+ #:use-module (gnu packages gnupg)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages maths)
#:use-module (gnu packages web)
- #:use-module (gnu packages ldc)
+ #:use-module (gnu packages wget)
#:use-module (gnu packages python)
+ #:use-module (gnu packages ruby)
#:use-module (gnu packages xorg)
- #:use-module (gnu packages version-control)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages zip)
#:use-module (gnu packages linux))
(define-public arrayfire
-(let ((commit "9ca1ea0"))
+(let ((commit "e118bf2"))
(package
(name "arrayfire")
- (version "3.3.1-hotfix")
+ (version "3.3.3")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -56,12 +62,15 @@
(file-name (string-append name "-" commit))
(sha256
(base32
- "067y98a9s78vpz7xsg889xnwfaza7c5gdv97yg9cgrdl0iljvsgp"))))
+ "050lwbl31spia17n9yq70z86x5inrahsd0y781g46a8ry2psviyj"))))
(native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)
("cmake" ,cmake)
("gawk" ,gawk)
+ ("git" ,git)
+ ("wget" ,wget)
("glew" ,glew)
+ ("git" ,git)
("libtool" ,libtool)
("pkg-config" ,pkg-config)))
(inputs `(("boost" ,boost)
@@ -69,11 +78,14 @@
("curl" ,curl)
("atlas" ,atlas)
("dbus" ,dbus)
+ ("opencl-headers" ,opencl-headers)
+ ("ocl-icd" ,ocl-icd)
("enca" ,enca)
("eudev" ,eudev)
("glew" ,glew)
("glib" ,glib)
("lapack" ,lapack)
+ ("scalapack" ,scalapack)
("libcap" ,libcap)
("libjpeg" ,libjpeg)
("libltdl" ,libltdl)
@@ -82,21 +94,21 @@
("mesa-utils" ,mesa-utils)
("python" ,python-2)
("freeimage" ,freeimage)
+ ("freeglut" ,freeglut)
("fftw" ,fftw)
("fftwf" ,fftwf)
("fftw-openmpi" ,fftw-openmpi)
("glew" ,glew)
("glu" ,glu)
("openblas" ,openblas)
- ("git" ,git)
("cmake" ,cmake)))
(build-system cmake-build-system)
(arguments
- `(#:configure-flags '("-DCMAKE_BUILD_TYPE=Release" "-DBUILD_OPENCL=OFF" "-DBUILD_GRAPHICS=OFF") #:tests? #f))
+ `(#:configure-flags '("-DBUILD_OPENCL=ON" "-DBUILD_GRAPHICS=OFF") #:tests? #f))
(synopsis "ArrayFire: a general purpose GPU library. https://arrayfire.com")
(description "ArrayFire is a high performance software library for parallel computing with an easy-to-use API. Its array based function set makes parallel programming simple.")
(home-page "http://arrayfire.com/")
- (license (list gpl2 gpl2+ gpl3 gpl3+)))))
+ (license (list license:gpl2 license:gpl2+ license:gpl3 license:gpl3+)))))
(define-public glfw
(package
@@ -114,6 +126,7 @@
(native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)
("cmake" ,cmake)
+ ("git" ,git)
("libtool" ,libtool)
("libpthread-stubs" ,libpthread-stubs)
("pkg-config" ,pkg-config)))
@@ -136,5 +149,71 @@
(home-page "http://www.glfw.org/")
(synopsis "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
(description "glfw is an Open Source, multi-platform library for creating windows with OpenGL contexts and receiving input and events.")
- (license (list gpl2))))
+ (license (list license:gpl2))))
+
+(define-public ocl-icd
+ (package
+ (name "ocl-icd")
+ (version "2.2.9")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
+ (inputs `(("zip" ,zip)
+ ("autoconf" ,autoconf)
+ ("automake" ,automake)
+ ("ruby" ,ruby)
+ ("libtool" ,libtool)
+ ("opencl-headers" ,opencl-headers)
+ ("libgcrypt" ,libgcrypt)))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases (modify-phases %standard-phases
+ (add-after 'unpack `bootstrap
+ (lambda _
+ (zero? (system* "autoreconf" "-vfi")))))))
+ (home-page "https://forge.imag.fr/projects/ocl-icd/")
+ (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
+ (description "OpenCL implementations are provided as ICD (Installable Client Driver).
+ An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
+ This free ICD Loader can load any (free or non free) ICD")
+ (license (list license:gpl2 license:ruby))))
+
+(define-public opencl-headers
+(let ((commit "c1770dc"))
+ (package
+ (name "opencl-headers")
+ (version (string-append "2.1-" commit ))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
+ (commit commit)))
+ (file-name (string-append name "-" commit))
+ (sha256
+ (base32
+ "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
+ (propagated-inputs '())
+ (inputs '())
+ (native-inputs '())
+ (build-system gnu-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (delete 'check)
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (copy-recursively "." (string-append
+ (assoc-ref outputs "out")
+ "/include/CL")))))))
+ (synopsis "The Khronos OpenCL headers")
+ (description "This package provides the Khronos OpenCL headers")
+ (home-page "https://www.khronos.org/registry/cl/")
+ (license (list license:gpl2)))))