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author | Efraim Flashner | 2020-12-07 11:37:24 +0200 |
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committer | Efraim Flashner | 2020-12-07 12:56:22 +0200 |
commit | 54c43ad0cdde59887d7e42dc09bd2d05a4a7de2d (patch) | |
tree | 3c15b866bfbc54483e202eebe7af035ee2399b60 /gn/deploy | |
parent | ac6999acd5f15a5037f9a9ab55b6ab4e373c1877 (diff) | |
download | guix-bioinformatics-54c43ad0cdde59887d7e42dc09bd2d05a4a7de2d.tar.gz |
gn: modularize slurm service
Diffstat (limited to 'gn/deploy')
-rw-r--r-- | gn/deploy/octopus.scm | 104 |
1 files changed, 23 insertions, 81 deletions
diff --git a/gn/deploy/octopus.scm b/gn/deploy/octopus.scm index ea65e8c..bb539e9 100644 --- a/gn/deploy/octopus.scm +++ b/gn/deploy/octopus.scm @@ -10,71 +10,6 @@ (plain-file "id_rsa.pub" "ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQDUCDY8ZKFF/ln0yzDt3CNmKz3cT4wzNv9bzCKvOBXcL0O7JtPWwqgLlZgmMHfzhzgReAkHcrt+Gdsyduzm/s9Y8c6QpyfaH6uoDwjfoOs6GrAjZaOXmAdncf+9HZEAy/IrygQ1YFRu6BvYogsdhhtN+O6IXBuvQQDRzldHs53Y53DK06Nrs19vAPwELXcDxcx1FvO+/L9nT8RHkI1Z0ucgTS+F/BWXl8+mh89r4j+4IRpZXOuCD0DrW5rgEE1EygF2dVdWZQESi23gU5Mt6vnmysXzwixB7j6I+xTih8LH4pz7hewEx6754e/cs9Gm7ZtfXKfXUt6+GtsBSBF3ULKl efraimf@octopus01")) -(define %slurm.conf - (plain-file "slurm.conf" - (string-append -"# Defaults are commented out, otherwise noted at the end of the line -# Values are from example in the man page or from Debian -ClusterName=linux # no default, suggests lowercase -#ControlMachine=octopus # defunct, use SlurmctldHost -SlurmctldHost=octopus # no default, falls back to next SlurmctldHost in list - -SlurmUser=slurm # default root, not recommended -#SlurmctldPort=6817 -#SlurmdPort=6818 -#AuthType=auth/munge -StateSaveLocation=/var/spool/slurmd/ctld # default /var/spool -#SlurmdSpoolDir=/var/spool/slurmd -#SwitchType=switch/none -#MpiDefault=none -#SlurmctldPidFile=/var/run/slurmctld.pid -#SlurmdPidFile=/var/run/slurmd.pid -ProctrackType=proctrack/pgid # default proctrack/cgroup -ReturnToService=1 # default 0 - -DebugFlags=NO_CONF_HASH # default empty -# TIMERS -SlurmctldTimeout=300 # default 120 -#SlurmdTimeout=300 -#InactiveLimit=0 -#MinJobAge=300 -#KillWait=30 -#WaitTime=0 -# - -# LOGGING -#SlurmctldDebug=3 -SlurmctldLogFile=/var/log/slurmctld.log # default none, syslog -#SlurmdDebug=3 -SlurmdLogFile=/var/log/slurmd.log # default none, syslog -#JobCompType=jobcomp/none - -# COMPUTE NODES -NodeName=octopus CPUs=1 Boards=1 SocketsPerBoard=1 CoresPerSocket=1 ThreadsPerCore=1 RealMemory=1024 -PartitionName=debug Nodes=ALL Default=YES MaxTime=INFINITE State=UP"))) - -(define %cgroup.conf - (plain-file "cgroup.conf" - (string-append -"### -# Slurm cgroup support configuration file -### -CgroupAutomount=yes # default no -ConstrainCores=yes # default no -#"))) - -(define %slurmdbd.conf - (plain-file "slurmdbd.conf" - (string-append -"#AuthType=auth/munge -#AuthInfo=/var/run/munge/munge.socket.2 -DbdHost=localhost # must be specified -StorageHost=localhost # unclear, must be specified? -StorageType=accounting_storage/none # must be specified -StorageUser=slurm # unclear -#PidFile=/var/run/slurmdbd.pid -LogFile=/var/log/slurmdbd.log # default none, syslog -SlurmUser=slurm # default root, not recommended"))) (operating-system (host-name "octopus") @@ -151,14 +86,6 @@ SlurmUser=slurm # default root, not recommended"))) (services (append (list - ;; This conflicts with everything when testing in a VM. - ;(agetty-service - ; (agetty-configuration - ; (extra-options '("-L")) - ; (baud-rate "115200") - ; (term "vt100") - ; (tty "ttyS0"))) - (service openssh-service-type (openssh-configuration (authorized-keys @@ -168,17 +95,32 @@ SlurmUser=slurm # default root, not recommended"))) (service slurm-service-type (slurm-configuration (package slurm-18.08) - (slurmd-log-file "/var/log/slurmd.log") - (slurmctld-log-file "/var/log/slurmctld.log") + (SlurmdLogFile "/var/log/slurmd.log") + (SlurmctldLogFile "/var/log/slurmctld.log") + (ClusterName "linux") + (SlurmUser "slurm") + (SlurmctldHost '("octopus")) + (DbdHost "localhost") + (StorageType "accounting_storage/none") + (slurm-extra-content + (string-append + "StateSaveLocation=/var/spool/slurmd/ctld # default /var/spool\n" + "ProctrackType=proctrack/pgid # default proctrack/cgroup\n" + "ReturnToService=1 # default 0\n" + "DebugFlags=NO_CONF_HASH # default empty\n" + "# COMPUTE NODES\n" + "NodeName=octopus CPUs=1 Boards=1 SocketsPerBoard=1 CoresPerSocket=1 ThreadsPerCore=1 RealMemory=1024\n" + "PartitionName=debug Nodes=ALL Default=YES MaxTime=INFINITE State=UP")) + (cgroup-extra-content + (string-append + "CgroupAutomount=yes # default no\n" + "ConstrainCores=yes # default no")) + (slurmdbd-extra-content + (string-append + "LogFile=/var/log/slurmdbd.log # default none, syslog")) (run-slurmdbd? #t) (run-slurmctld? #t))) - ;; Some slurm configuration files - (simple-service 'slurm-conf etc-service-type - `(("slurm/slurm.conf" ,%slurm.conf) - ("slurm/cgroup.conf" ,%cgroup.conf) - ("slurm/slurmdbd.conf" ,%slurmdbd.conf))) - (service dhcp-client-service-type) (service openntpd-service-type)) %base-services))) |