Import r-dendextend and r-gggenes for cosigt workflow

1 files changed, 52 insertions, 0 deletions

diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index a404c7b..7cf1398 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -5031,3 +5031,55 @@ mis-mapped, and attempts to re-map it.  Liftoff can also find
 additional gene copies present in the target assembly that are not
 annotated in the reference.")
     (license license:gpl3+)))
+
+(define-public r-gggenes
+  (package
+    (name "r-gggenes")
+    (version "0.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gggenes" version))
+       (sha256
+        (base32 "0400qhppx8kg70f6bbya3k6lhdgjj3dllgfgg6s509kbp5qsjbcd"))))
+    (properties `((upstream-name . "gggenes")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-cli r-ggfittext r-ggplot2 r-lifecycle r-rlang))
+    (native-inputs (list r-knitr r-spelling r-testthat))
+    (home-page "https://wilkox.org/gggenes/")
+    (synopsis "Draw Gene Arrow Maps in 'ggplot2'")
+    (description
+     "This package provides a ggplot2 extension for drawing gene arrow maps.")
+    (license gpl2)))
+
+
+(define-public r-dendextend
+  (package
+    (name "r-dendextend")
+    (version "1.19.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dendextend" version))
+       (sha256
+        (base32 "0097bmdv960khjkf3gvbdrazx4ns8i9221m9h68vnq541h61ag5y"))))
+    (properties `((upstream-name . "dendextend")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-ggplot2 r-magrittr r-viridis))
+    (native-inputs (list r-ape
+                         r-cluster
+                         r-data-table
+                         r-dendextendrcpp
+                         r-fpc
+                         r-knitr
+                         r-pvclust
+                         r-testthat))
+    (home-page "https://talgalili.github.io/dendextend/")
+    (synopsis "Extending 'dendrogram' Functionality in R")
+    (description
+     "Offers a set of functions for extending dendrogram objects in R, letting you
+visualize and compare trees of hierarchical clusterings'.  You can (1) Adjust a
+tree's graphical parameters - the color, size, type, etc of its branches, nodes
+and labels. (2) Visually and statistically compare different dendrograms to one
+another.")
+    (license (list gpl2 gpl3))))