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authorpjotrp2026-03-17 17:41:02 +0100
committerpjotrp2026-03-21 08:27:57 +0100
commit7309cf6c5d4714e7551ba768049da9119d03389c (patch)
tree275ef30e05c45f1bfb984052d79ae3758c6045d8
parent64dcf08d3e9c8507fdf849a3151a1e17e2978fe9 (diff)
downloadguix-bioinformatics-7309cf6c5d4714e7551ba768049da9119d03389c.tar.gz
simplify(vcflib): moving patches to main vcflib source tree [AI]
-rw-r--r--gn/packages/bioinformatics.scm20
1 files changed, 1 insertions, 19 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm
index f7981e9..fddb29c 100644
--- a/gn/packages/bioinformatics.scm
+++ b/gn/packages/bioinformatics.scm
@@ -2470,25 +2470,7 @@ Cflags: -I${includedir}~%"
               ;; Skip pyvcflib and realign tests (require Python bindings)
               (invoke "ctest" "--output-on-failure"
                       "--exclude-regex" "pyvcflib|realign")))
-          (add-after 'install 'install-pkg-config-file
-            (lambda _
-              (let ((pkgconfig (string-append #$output "/lib/pkgconfig")))
-                (mkdir-p pkgconfig)
-                (with-output-to-file (string-append pkgconfig "/vcflib.pc")
-                  (lambda _
-                    (format #t "\
-prefix=~a~@
-exec_prefix=${prefix}~@
-libdir=${exec_prefix}/lib~@
-includedir=${prefix}/include/vcflib~@
-~@
-Name: vcflib~@
-Version: ~a~@
-Requires: libwfa2, smithwaterman, fastahack, tabixpp~@
-Description: C++ library for parsing and manipulating VCF files~@
-Libs: -L${libdir} -lvcflib~@
-Cflags: -I${includedir}~%"
-                            #$output #$version)))))))))
+)))
     (home-page "https://github.com/vcflib/vcflib/")
     (synopsis "Library for parsing and manipulating VCF files")
     (description "Vcflib provides methods to manipulate and interpret