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authorPjotr Prins2020-05-22 06:55:02 -0500
committerPjotr Prins2020-05-22 06:55:02 -0500
commit3d6be821a8085cddf0e9011a99a386daa15d0cc6 (patch)
tree8864a63ec2daad6d56cc741a403e91d44770dda2
parent934c2f79984073bac2cbe184c1de562e1580325c (diff)
downloadguix-bioinformatics-3d6be821a8085cddf0e9011a99a386daa15d0cc6.tar.gz
Swapping mysql for mariadb
-rw-r--r--gn/packages/gemma.scm1
-rw-r--r--gn/packages/genenetwork.scm6
2 files changed, 4 insertions, 3 deletions
diff --git a/gn/packages/gemma.scm b/gn/packages/gemma.scm
index d602679..9bbc960 100644
--- a/gn/packages/gemma.scm
+++ b/gn/packages/gemma.scm
@@ -166,6 +166,7 @@
(native-inputs ; for running tests
`(("perl" ,perl)
("which" ,which)
+ ; ("gcc@8" ,gcc-8)
))
(build-system gnu-build-system)
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm
index 8696db0..4bd5c94 100644
--- a/gn/packages/genenetwork.scm
+++ b/gn/packages/genenetwork.scm
@@ -100,7 +100,7 @@
(propagated-inputs
`(("python" ,python)
("elixir" ,elixir)
- ("mysql" ,mysql)
+ ("mariadb" ,mariadb)
("gnu-make" ,gnu-make) ; needed for mysqlex
))
(arguments
@@ -262,7 +262,7 @@ location of a putative QTL.")
("r-qtl" ,r-qtl)
("r-wgcna" ,r-wgcna)
("redis" ,redis)
- ("mysql" ,mysql)
+ ("mariadb" ,mariadb)
("gemma" ,gemma-gn2-git)
("gemma-wrapper" ,gemma-wrapper)
; ("genenetwork2-files-small" ,genenetwork2-files-small)
@@ -489,7 +489,7 @@ written in C")
("r-ctl" ,r-ctl)
("r-qtl" ,r-qtl)
("redis" ,redis)
- ("mysql" ,mysql)
+ ("mariadb" ,mariadb)
("nginx" ,nginx)
("r-wgcna" ,r-wgcna)
;; ("r-phewas" ,r-phewas)