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| author | Efraim Flashner | 2020-04-21 01:54:41 -0500 |
|---|---|---|
| committer | Efraim Flashner | 2020-04-21 01:55:50 -0500 |
| commit | f1112e22eaa8226fd1698caf3e3ff77474c89dfe (patch) | |
| tree | 6e85f13d29d31b268e6e3d6b6695d9a28e698484 | |
| parent | f181f300430abc853ea32e9255f8ea8cfecedd19 (diff) | |
| download | guix-bioinformatics-f1112e22eaa8226fd1698caf3e3ff77474c89dfe.tar.gz | |
gn: ratspub: Update to 0.3.
Update inputs based on upstream's changes, add comments about skipped
input. Add hidden package of package-without-tests as dependency.
| -rw-r--r-- | gn/packages/ratspub.scm | 26 |
1 files changed, 19 insertions, 7 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm index 3e5727c..2220062 100644 --- a/gn/packages/ratspub.scm +++ b/gn/packages/ratspub.scm @@ -1,12 +1,13 @@ (define-module (gn packages ratspub) #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix utils) #:use-module (guix packages) #:use-module (guix git-download) #:use-module (guix build-system python) #:use-module (gnu packages admin) #:use-module (gnu packages bioinformatics) #:use-module (gn packages javascript) - #:use-module (gnu packages time) + #:use-module (gnu packages machine-learning) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) @@ -15,7 +16,7 @@ (define-public ratspub (package (name "ratspub") - (version "0.2.2") + (version "0.3") (source (origin (method git-fetch) (uri (git-reference @@ -24,10 +25,10 @@ (file-name (git-file-name name version)) (sha256 (base32 - "0q111fsch69kjv96d0pld9agqpwazh9p47vsvig63hmmjp72wa84")))) + "08z1yr1k5wddpxwdr3caqi113jx6vy38fam7k8v40sj5chv2h3b2")))) (build-system python-build-system) (arguments - `(#:tests? #f ; no test suite + `(#:tests? #f ; no test suite #:phases (modify-phases %standard-phases (delete 'configure) @@ -106,16 +107,16 @@ `(("edirect" ,edirect) ("inetutils" ,inetutils) ("python-bcrypt" ,python-bcrypt) - ("python-flask" ,python-flask) ("python-flask-sqlalchemy" ,python-flask-sqlalchemy) + ("python-keras" ,python-keras-for-ratspub) ("python-nltk" ,python-nltk) - ("python-pytz" ,python-pytz))) + ("tensorflow" ,tensorflow))) (native-inputs `(("bootstrap" ,web-bootstrap) ("cytoscape" ,javascript-cytoscape) ("font-awesome" ,web-font-awesome) ("jquery" ,web-jquery) - ;("js-popper" ,js-popper) + ;("js-popper" ,js-popper) ; empty output )) (home-page "http://rats.pub/") (synopsis "Relationship with Addiction Through Searches of PubMed") @@ -128,3 +129,14 @@ the question \"What do we know about these genes and addiction?\". Data from Studies} catalog are also included in the search to better answer this question.") (license license:expat))) + +;; We want a copy of python-keras without tests. +(define-public python-keras-for-ratspub + (hidden-package + (package + (inherit python-keras) + (arguments + (substitute-keyword-arguments (package-arguments python-keras) + ((#:phases phases) + `(modify-phases ,phases + (delete 'check)))))))) |