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authorpjotrp2016-12-11 07:50:54 +0000
committerpjotrp2016-12-11 07:50:54 +0000
commit93882785222202358ae73b9b01b951a563445fcf (patch)
tree7de1c89b2f97ab96c2b2acf789596140490093ce
parent02c85bfe87c35a715cd95fc13c0f7b258c97fb44 (diff)
downloadguix-bioinformatics-93882785222202358ae73b9b01b951a563445fcf.tar.gz
pocl: remove pocl for the time being - it confuses things
-rw-r--r--gn/packages/pocl.scm307
1 files changed, 0 insertions, 307 deletions
diff --git a/gn/packages/pocl.scm b/gn/packages/pocl.scm
deleted file mode 100644
index ad3417e..0000000
--- a/gn/packages/pocl.scm
+++ /dev/null
@@ -1,307 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016 Dennis Mungai <dmngaie@gmail.com>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gn packages pocl)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (guix git-download)
- #:use-module (guix download)
- #:use-module (guix utils)
- #:use-module (guix build-system gnu)
- #:use-module (guix build-system cmake)
- #:use-module (guix packages)
- #:use-module (gnu packages)
- #:use-module (srfi srfi-1)
- #:use-module (gnu packages algebra)
- #:use-module (gnu packages autotools)
- #:use-module (gnu packages curl)
- #:use-module (gnu packages boost)
- #:use-module (gnu packages bootstrap)
- #:use-module (gnu packages base)
- #:use-module (gnu packages gawk)
- #:use-module (gnu packages cmake)
- #:use-module (gnu packages gcc)
- #:use-module (gnu packages glib)
- #:use-module (gnu packages image)
- #:use-module (gnu packages video)
- #:use-module (gnu packages textutils)
- #:use-module (gnu packages gl)
- #:use-module (gnu packages llvm)
- #:use-module (gnu packages pkg-config)
- #:use-module (gnu packages maths)
- #:use-module (gnu packages mpi)
- #:use-module (gnu packages web)
- #:use-module (gnu packages perl)
- #:use-module (gnu packages python)
- #:use-module (gnu packages xorg)
- #:use-module (gnu packages xml)
- #:use-module (gnu packages version-control)
- #:use-module (gnu packages ruby)
- #:use-module (gnu packages gnupg)
- #:use-module ((gnu packages zip) #:prefix gnuzip:)
- #:use-module (gnu packages linux))
-
-(define-public pocl
-(let ((commit "7aefc52"))
- (package
- (name "pocl")
- (version (string-append "v09rc-" commit ))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/pocl/pocl.git")
- (commit commit)))
- (file-name (string-append name "-" commit))
- (sha256
- (base32
- "03wbcxkx1w5kx0crangsnah0xq218bhb99vglmn00wcjhhw80qim"))))
-(native-inputs `(("autoconf" ,autoconf)
- ("automake" ,automake)
- ("libtool" ,libtool)
- ("cmake" ,cmake)
- ("pkg-config" ,pkg-config)))
-(inputs `(("python" ,python-2)
- ("boost" ,boost)
- ("dbus" ,dbus)
- ("clang" ,clang-3.7.1)
- ("clang-runtime" ,clang-runtime-3.7.1)
- ("enca" ,enca)
- ("eudev" ,eudev)
- ("fftw-openmpi" ,fftw-openmpi)
- ("glew" ,glew)
- ("hwloc" ,hwloc)
- ("libcap" ,libcap)
- ("libjpeg" ,libjpeg)
- ("libltdl" ,libltdl)
- ("libtiff" ,libtiff)
- ("llvm" ,llvm-3.7.1)
- ("ocl-icd" ,ocl-icd)
- ("opencl-headers" ,opencl-headers)
- ("mesa-utils" ,mesa-utils)
- ("openmpi" ,openmpi)
- ("perl" ,perl)
- ("randrproto" ,randrproto)
- ("libxrandr" ,libxrandr)
- ("xineramaproto" ,xineramaproto)
- ("libxinerama" ,libxinerama)
- ("libxcursor" ,libxcursor)
- ("fftw-openmpi" ,fftw-openmpi)))
- (build-system gnu-build-system)
- (arguments
- `(#:configure-flags '("--enable-icd")
- #:tests? #f
- #:phases
- (modify-phases %standard-phases
- (add-before
- 'configure 'rewrite-usr-bin
- (lambda _
- (zero? (system* "./autogen.sh")))))))
- (synopsis "pocl: Portable Computing Language (pocl) aims to become a MIT-licensed
- open source implementation of the OpenCL standard which can be easily adapted for
- new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.")
- (description "Portable Computing Language (pocl) aims to become a MIT-licensed
- open source implementation of the OpenCL standard which can be easily adapted for
- new targets and devices, both for homogeneous CPU and heterogenous GPUs/accelerators.")
- (home-page "http://portablecl.org/")
- (license license:gpl2))))
-
-(define-public ocl-icd
- (package
- (name "ocl-icd")
- (version "2.2.9")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://forge.imag.fr/frs/download.php/716/ocl-icd-"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1rgaixwnxmrq2aq4kcdvs0yx7i6krakarya9vqs7qwsv5hzc32hc"))))
- (inputs `(("zip" ,gnuzip:zip)
- ("autoconf" ,autoconf)
- ("automake" ,automake)
- ("ruby" ,ruby)
- ("libtool" ,libtool)
- ("opencl-headers" ,opencl-headers)
- ("libgcrypt" ,libgcrypt)))
- (build-system gnu-build-system)
- (arguments
- '(#:phases (modify-phases %standard-phases
- (add-after 'unpack `bootstrap
- (lambda _
- (zero? (system* "autoreconf" "-vfi")))))))
- (home-page "https://forge.imag.fr/projects/ocl-icd/")
- (synopsis "OpenCL implementations are provided as ICD (Installable Client Driver).")
- (description "OpenCL implementations are provided as ICD (Installable Client Driver).
- An OpenCL program can use several ICD thanks to the use of an ICD Loader as provided by this project.
- This free ICD Loader can load any (free or non free) ICD")
- (license license:gpl2)))
-
- (define-public opencl-headers
-(let ((commit "c1770dc"))
- (package
- (name "opencl-headers")
- (version (string-append "2.1-" commit ))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/KhronosGroup/OpenCL-Headers.git")
- (commit commit)))
- (file-name (string-append name "-" commit))
- (sha256
- (base32
- "0m9fkblqja0686i2jjqiszvq3df95gp01a2674xknlmkd6525rck"))))
- (propagated-inputs '())
- (inputs '())
- (native-inputs '())
- (build-system gnu-build-system)
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (delete 'build)
- (delete 'check)
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (copy-recursively "." (string-append
- (assoc-ref outputs "out")
- "/include/CL")))))))
- (synopsis "The Khronos OpenCL headers")
- (description "This package provides the Khronos OpenCL headers")
- (home-page "https://www.khronos.org/registry/cl/")
- (license license:gpl2))))
-
-(define (clang-runtime-from-llvm llvm hash)
- (package
- (name "clang-runtime")
- (version (package-version llvm-3.7.1))
- (source
- (origin
- (method url-fetch)
- (uri (string-append "http://llvm.org/releases/"
- version "/compiler-rt-" version ".src.tar.xz"))
- (sha256
- (base32
- "10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx"))))
- (build-system cmake-build-system)
- (native-inputs (package-native-inputs llvm))
- (inputs
- `(("llvm" ,llvm)))
- (arguments
- `(;; Don't use '-g' during the build to save space.
- #:build-type "Release"))
-
- (home-page "http://compiler-rt.llvm.org")
- (synopsis "Runtime library for Clang/LLVM")
- (description
- "The \"clang-runtime\" library provides the implementations of run-time
-functions for C and C++ programs. It also provides header files that allow C
-and C++ source code to interface with the \"sanitization\" passes of the clang
-compiler. In LLVM this library is called \"compiler-rt\".")
- (license license:ncsa)
-
- ;; <http://compiler-rt.llvm.org/> doesn't list MIPS as supported.
- (supported-systems (delete "mips64el-linux" %supported-systems))))
-
-(define (clang-from-llvm llvm clang-runtime hash)
- (package
- (name "clang")
- (version (package-version llvm-3.7.1))
- (source
- (origin
- (method url-fetch)
- (uri (string-append "http://llvm.org/releases/"
- version "/cfe-" version ".src.tar.xz"))
- (sha256
- (base32
- "0x065d0w9b51xvdjxwfzjxng0gzpbx45fgiaxpap45ragi61dqjn"))
- (patches (list (search-patch "clang-libc-search-path.patch")))))
- ;; Using cmake allows us to treat llvm as an external library. There
- ;; doesn't seem to be any way to do this with clang's autotools-based
- ;; build system.
- (build-system cmake-build-system)
- (native-inputs (package-native-inputs llvm))
- (inputs
- `(("libxml2" ,libxml2)
- ("libstdc++-4.9", libstdc++-4.9)
- ("python" ,python-2)
- ("gcc-lib" ,gcc "lib")
- ,@(package-inputs llvm)))
- (propagated-inputs
- `(("llvm" ,llvm)
- ("clang-runtime" ,clang-runtime)))
- (arguments
- `(#:configure-flags
- (list "-DCLANG_INCLUDE_TESTS=True"
-
- ;; Find libgcc_s, crtbegin.o, and crtend.o.
- (string-append "-DGCC_INSTALL_PREFIX="
- (assoc-ref %build-inputs "gcc-lib"))
-
- ;; Use a sane default include directory.
- (string-append "-DC_INCLUDE_DIRS="
- (assoc-ref %build-inputs "libc")
- "/include"))
-
- ;; Don't use '-g' during the build to save space.
- #:build-type "Release"
-
- #:phases (modify-phases %standard-phases
- (add-after
- 'unpack 'set-glibc-file-names
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((libc (assoc-ref inputs "libc"))
- (compiler-rt (assoc-ref inputs "clang-runtime")))
- (substitute* "lib/Driver/Tools.cpp"
- ;; Patch the 'getLinuxDynamicLinker' function to that
- ;; it uses the right dynamic linker file name.
- (("/lib64/ld-linux-x86-64.so.2")
- (string-append libc
- ,(glibc-dynamic-linker)))
-
- ;; Link to libclang_rt files from clang-runtime.
- (("TC\\.getDriver\\(\\)\\.ResourceDir")
- (string-append "\"" compiler-rt "\"")))
-
- ;; Same for libc's libdir, to allow crt1.o & co. to be
- ;; found.
- (substitute* "lib/Driver/ToolChains.cpp"
- (("@GLIBC_LIBDIR@")
- (string-append libc "/lib")))))))))
-
- ;; Clang supports the same environment variables as GCC.
- (native-search-paths
- (list (search-path-specification
- (variable "CPATH")
- (files '("include")))
- (search-path-specification
- (variable "LIBRARY_PATH")
- (files '("lib" "lib64")))))
-
- (home-page "http://clang.llvm.org")
- (synopsis "C language family frontend for LLVM")
- (description
- "Clang is a compiler front end for the C, C++, Objective-C and
-Objective-C++ programming languages. It uses LLVM as its back end. The Clang
-project includes the Clang front end, the Clang static analyzer, and several
-code analysis tools.")
- (license license:ncsa)))
-
-
-
-
-