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authorpjotrp2017-09-21 12:56:58 +0000
committerpjotrp2017-09-21 12:56:58 +0000
commit4b06881660a1884f662da67f75e55de3d4467a94 (patch)
treeba01c2e340cfc55aaca11bf21868e87812beca25
parentc6ba9a5f1b75a513297e5a8dbc2b90003fe9f2a1 (diff)
downloadguix-bioinformatics-4b06881660a1884f662da67f75e55de3d4467a94.tar.gz
soap and rserve build
-rw-r--r--gn/packages/book_evolutionary_genomics.scm56
1 files changed, 52 insertions, 4 deletions
diff --git a/gn/packages/book_evolutionary_genomics.scm b/gn/packages/book_evolutionary_genomics.scm
index eaceab7..dca4350 100644
--- a/gn/packages/book_evolutionary_genomics.scm
+++ b/gn/packages/book_evolutionary_genomics.scm
@@ -25,6 +25,7 @@
; #:use-module (gnu packages ldc)
#:use-module (gnu packages python)
#:use-module (gnu packages statistics)
+ #:use-module (gnu packages tls)
#:use-module (gnu packages vim)
; #:use-module (gnu packages web)
; #:use-module (gnu packages xml)
@@ -36,7 +37,7 @@
; #:use-module (gn packages statistics)
#:use-module (srfi srfi-1))
-(define-public r-gener
+(define-public r-gener ;; poor implementation
(package
(name "r-gener")
(version "2.20.0")
@@ -55,6 +56,54 @@
".")
(license license:expat))) ; CeCILL-2.0
+(define-public r-soap ;; obsolete package and fails to build
+ (package
+ (name "r-soap")
+ (version "1.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri "https://sourceforge.net/projects/rsoap/files/RSOAP/1.1.4/RSOAP-1.1.4.tar.gz/download")
+ (sha256
+ (base32
+ "0vggycbjnjpx2c4q4wgaxfd0ig3prw31gdw9djjkbmzc3crbhj8j"))))
+ (propagated-inputs
+ `(("python" ,python)
+ ("r" ,r)
+ ))
+ (build-system r-build-system)
+ (home-page "https://sourceforge.net/projects/rsoap/")
+ (synopsis "SOAP server for R")
+ (description
+ ".")
+ (license license:expat))) ; CeCILL-2.0
+
+(define-public r-rserve
+ (package
+ (name "r-rserve")
+ (version "1.8-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri "https://github.com/s-u/Rserve/releases/download/1.8-4/Rserve_1.8-4.tar.gz")
+ (sha256
+ (base32
+ "1dncwiyhy1s1pimb6f2dzs3ivahah5id3chw4r10j92754bxmrn2"))))
+ (propagated-inputs
+ `(
+ ; ("python" ,python)
+ ("r" ,r)
+ ))
+ (inputs `(("zlib" ,zlib)
+ ("openssl" ,openssl)))
+
+ (build-system r-build-system)
+ (home-page "https://github.com/s-u/Rserve")
+ (synopsis "Fast, flexible and powerful server providing access to R from many languages and systems http://RForge.net/Rserve")
+ (description
+ ".")
+ (license license:gpl2)))
+
(define-public book-evolutionary-genomics
(let ((md5 "93e745e9c"))
(package
@@ -73,10 +122,9 @@
(propagated-inputs
`(("python" ,python)
("r" ,r)
- ))
- (inputs
- `(
("r-gener" ,r-gener)
+ ("r-biostrings" ,r-biostrings)
+ ("r-rserve" ,r-rserve)
))
(arguments
`(#:modules ((guix build utils))