aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorpjotrp2020-08-28 08:57:05 +0100
committerpjotrp2020-08-28 09:01:51 +0100
commit99088fb0560671c7ba01a396d507bf84df6fa787 (patch)
treea1018a8a4773cef0fefef35d9927b8ab059de983
parent9bbb9065b07ea5bb9e8998a1e6866809f766d120 (diff)
downloadguix-bioinformatics-99088fb0560671c7ba01a396d507bf84df6fa787.tar.gz
New package python-pandas-plink
-rw-r--r--gn/packages/python.scm36
1 files changed, 36 insertions, 0 deletions
diff --git a/gn/packages/python.scm b/gn/packages/python.scm
index 91899f4..2257194 100644
--- a/gn/packages/python.scm
+++ b/gn/packages/python.scm
@@ -27,7 +27,9 @@
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-compression)
#:use-module (gnu packages python-crypto)
+ #:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
@@ -1611,3 +1613,37 @@ sorted order.")
`(("python-argcomplete" ,python-argcomplete)
("python-requests" ,python-requests)
,@(package-native-inputs python-pytest)))))
+
+(define-public python-pandas-plink
+ (package
+ (name "python-pandas-plink")
+ (version "2.0.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://files.pythonhosted.org/packages/6f/de/48ccae952383ff3c9d227e06d6968bbf9923d509e40490f734baf2efb8b5/pandas_plink-" version ".tar.gz"))
+ (sha256
+ (base32
+ "08wgrlv38nvsjcaw806fwy6bfl0h9swvr5x8nqx5xcsn8r04lsjq"))))
+ (build-system python-build-system)
+ (arguments
+ '(#:tests? #f))
+ (propagated-inputs
+ `(("python-cffi" ,python-cffi)
+ ("python-dask" ,python-dask)
+ ("python-deprecated" ,python-deprecated)
+ ("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-runner" ,python-pytest-runner)
+ ("python-tqdm" ,python-tqdm)
+ ("python-xarray" ,python-xarray)
+ ("python-zstandard" ,python-zstandard)))
+ (home-page
+ "https://github.com/limix/pandas-plink")
+ (synopsis
+ "Read PLINK files into Pandas data frames")
+ (description
+ "Read PLINK files into Pandas data frames")
+ (license license:expat)))