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authorEfraim Flashner2020-09-02 04:26:54 -0500
committerEfraim Flashner2020-09-02 04:26:54 -0500
commit87515bb2a34cbc19e3ad4693867661734b7f415e (patch)
tree1e615757aff6fadf16b60a149f4606518e4f4741
parentf8e77f59b8dd7c4b55cd952e5bb6e455822dd756 (diff)
downloadguix-bioinformatics-87515bb2a34cbc19e3ad4693867661734b7f415e.tar.gz
ratspub: Update to 0.4.1.
-rw-r--r--gn/packages/ratspub.scm32
1 files changed, 20 insertions, 12 deletions
diff --git a/gn/packages/ratspub.scm b/gn/packages/ratspub.scm
index 912f535..ea333db 100644
--- a/gn/packages/ratspub.scm
+++ b/gn/packages/ratspub.scm
@@ -7,19 +7,20 @@
#:use-module (guix build-system python)
#:use-module (gnu packages admin)
#:use-module (gnu packages bioinformatics)
- #:use-module (gn packages javascript)
- #:use-module (gn packages machine-learning)
+ #:use-module (gnu packages javascript)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
+ #:use-module (gn packages javascript)
+ #:use-module (gn packages machine-learning)
#:use-module (gn packages web))
(define-public ratspub
(package
(name "ratspub")
- (version "0.4.0")
+ (version "0.4.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -28,13 +29,14 @@
(file-name (git-file-name name version))
(sha256
(base32
- "0hasm6xncqkan9s4sw89s1x9gcybw59fzvpmr7fk1camvij7mywh"))
- (modules '((guix build utils)))
- (snippet
- '(begin (substitute* "server.py"
- ;; Keep the service running on port 4200
- (("4201") "4200"))
- #t))))
+ "1daf0qd0lyvfp9ab1qvhj37xvrrzkwvsfnickls5i9lbpgisizm4"))
+ ;(modules '((guix build utils)))
+ ;(snippet
+ ; '(begin (substitute* "server.py"
+ ; ;; Keep the service running on port 4200
+ ; (("4200") "4201"))
+ ; #t))
+ ))
(build-system python-build-system)
(arguments
`(#:tests? #f ; no test suite
@@ -50,8 +52,9 @@
"templates/tableview.html"
"templates/tableview0.html"
"templates/userarchive.html")
- (("script src=.*")
- "script src=\"/static/cytoscape.min.js\"></script>\n"))
+ ;(("https.*FileSaver.js.*>") "/static/FileSaver.js\">") ; We have 1.3.8, origin is 1.3.2.
+ ;(("https.*cytoscape-svg.js.*>") "/static/cytoscape-svg.js\">") ; TODO
+ (("https.*cytoscape.min.js.*>") "/static/cytoscape.min.js\">"))
(substitute* "templates/layout.html"
(("https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css.*")
"/static/bootstrap.min.css\">\n")
@@ -79,6 +82,7 @@
(bootstrap (assoc-ref inputs "bootstrap"))
(cytoscape (assoc-ref inputs "cytoscape"))
(jquery (assoc-ref inputs "jquery"))
+ (js-filesaver (assoc-ref inputs "js-filesaver"))
;(js-popper (assoc-ref inputs "js-popper"))
)
(symlink (string-append awesome
@@ -96,6 +100,9 @@
(symlink (string-append jquery
"/share/web/jquery/jquery.slim.min.js")
(string-append out "/static/jquery.slim.min.js"))
+ (symlink (string-append js-filesaver
+ "/share/javascript/FileSaver.js")
+ (string-append out "/static/FileSaver.js"))
;(symlink (string-append js-popper
; "/share/web/popper/popper.min.js")
; (string-append out "/static/popper.min.js"))
@@ -125,6 +132,7 @@
("cytoscape" ,javascript-cytoscape)
("font-awesome" ,web-font-awesome)
("jquery" ,web-jquery)
+ ("js-filesaver" ,js-filesaver)
;("js-popper" ,js-popper) ; empty output
))
(home-page "http://rats.pub/")