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| author | Efraim Flashner | 2021-07-15 12:19:08 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2021-07-15 12:19:08 +0300 |
| commit | 69223db92f597d829cc408a218e75eead35afb9a (patch) | |
| tree | d2f4413ebbccd410184b5788d681b3361952c0ad | |
| parent | eecc939c493e1d5d0aa11c2831ce847be47a1c6f (diff) | |
| download | guix-bioinformatics-69223db92f597d829cc408a218e75eead35afb9a.tar.gz | |
gn: Provide rtg.cfg for rtg-tools.
| -rw-r--r-- | gn/packages/bioinformatics.scm | 6 | ||||
| -rw-r--r-- | gn/packages/java.scm | 16 |
2 files changed, 18 insertions, 4 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index bb11987..de66599 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -2063,10 +2063,8 @@ cases include: (lambda* (#:key inputs #:allow-other-keys) (let ((rtg-tools (assoc-ref inputs "rtg-tools")) (dest "external/libexec/rtg-tools-install")) - (mkdir-p dest) - (copy-recursively rtg-tools dest) - (copy-file "external/rtg.cfg" - (string-append dest "/rtg.cfg")) + (mkdir-p (dirname dest)) + (symlink rtg-tools dest) #t))) (replace 'configure (lambda* (#:key outputs (configure-flags '()) (out-of-source? #t) diff --git a/gn/packages/java.scm b/gn/packages/java.scm index 23b59be..cdd9d00 100644 --- a/gn/packages/java.scm +++ b/gn/packages/java.scm @@ -339,6 +339,22 @@ piece of information.") (delete-file-recursively pkg) (delete-file (string-append pkg "-nojre.zip"))) #t))) + (add-after 'install 'create-rtg.cfg + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (with-output-to-file (string-append out "/rtg.cfg") + (lambda _ + (format #t "RTG_JAVA=\"~a\"~@ + RTG_TALKBACK=false~@ + RTG_USAGE=false~%" + (which "java")))) + #t))) + (add-after 'install 'install-completions + (lambda* (#:key outputs #:allow-other-keys) + (install-file "installer/resources/common/scripts/rtg-bash-completion" + (string-append (assoc-ref outputs "out") + "/share/bash-completion/completions")) + #t)) (delete 'generate-jar-indices)))) ; manually installed (inputs `(("java-commons-collections" ,java-commons-collections) |