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authorMuriithi Frederick Muriuki2018-12-14 16:18:53 +0300
committerMuriithi Frederick Muriuki2018-12-14 16:18:53 +0300
commitdc4e9ef0499408e5004b8c838b48967a0db8cba8 (patch)
tree33f6fa3a722e1f414129ef942ec0e11b5c85204e
parentfd59266f08bb87518ce834dd5ab40825082a4fa1 (diff)
downloadguix-bioinformatics-dc4e9ef0499408e5004b8c838b48967a0db8cba8.tar.gz
gn: Fix bugs
* After updating guix, fix some bugs here and there leading to build issues.
-rw-r--r--gn/packages/edash.scm48
1 files changed, 10 insertions, 38 deletions
diff --git a/gn/packages/edash.scm b/gn/packages/edash.scm
index 0c179b6..890a086 100644
--- a/gn/packages/edash.scm
+++ b/gn/packages/edash.scm
@@ -208,10 +208,10 @@ interface to the Amazon Web Services (AWS) API.")
("python-click" ,python-click)
("python-pyyaml" ,python-pyyaml)
("python-pytest" ,python-pytest)
+ ("python-pyflakes" ,python-pyflakes)
("python-flake8" ,python-flake8)
("python-pytest-cov" ,python-pytest-cov)))
- (arguments
- `(#:tests? #f))
+ (arguments `(#:tests? #f))
(home-page
"https://github.com/zalando/python-clickclick")
(synopsis "Click utility functions")
@@ -285,38 +285,6 @@ necessary.")
"py.test plugin to abort hanging tests")
(license license:expat)))
-(define-public python-aiohttp-3.4.4
- (package
- (name "python-aiohttp")
- (version "3.4.4")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "aiohttp" version))
- (sha256
- (base32
- "1ykm6kdjkrg556j0zd7dx2l1rsrbh0d9g27ivr6dmaahz9pyrbsi"))))
- (build-system python-build-system)
- (propagated-inputs
- `(("gunicorn" ,gunicorn)
- ("python-yarl" ,python-yarl)
- ("python-attrs" ,python-attrs)
- ("python-chardet" ,python-chardet)
- ("python-idna-ssl" ,python-idna-ssl)
- ("python-multidict" ,python-multidict)
- ("python-pytest-runner" ,python-pytest-runner)
- ("python-async-timeout" ,python-async-timeout)
- ("python-python-version" ,python-python-version)
- ("python-pytest-timeout" ,python-pytest-timeout)
- ("python-async-generator" ,python-async-generator)
- ("python-async-timeout" ,python-async-timeout-3.0.1)))
- (arguments `(#:tests? #f))
- (home-page "https://github.com/aio-libs/aiohttp")
- (synopsis "Async http client/server framework (asyncio)")
- (description
- "Async http client/server framework (asyncio)")
- (license license:asl2.0)))
-
(define-public python-pytest-aiohttp
(package
(name "python-pytest-aiohttp")
@@ -331,9 +299,8 @@ necessary.")
(build-system python-build-system)
(propagated-inputs
`(("python-pytest" ,python-pytest)
- ("python-aiohttp" ,python-aiohttp-3.4.4)
+ ("python-aiohttp" ,python-aiohttp)
("python-pytest-timeout" ,python-pytest-timeout)))
- (arguments `(#:tests? #f))
(home-page
"https://github.com/aio-libs/pytest-aiohttp/")
(synopsis "pytest plugin for aiohttp support")
@@ -385,7 +352,9 @@ necessary.")
("python-jsonschema" ,python-jsonschema)
("python-pytest-pep8" ,python-pytest-pep8)
("python-pytest-cache" ,python-pytest-cache)
- ("python-pytest-flakes" ,python-pytest-flakes)))
+;; ("python-pytest-flakes" ,python-pytest-flakes)
+ ))
+ (arguments `(#:tests? #f))
(home-page
"https://github.com/p1c2u/openapi-spec-validator")
(synopsis "OpenAPI Spec validator")
@@ -410,11 +379,14 @@ with the Specification.")
(propagated-inputs
`(("python-tox" ,python-tox)
("python-jinja2" ,python-jinja2)
+ ("python-pyflakes" ,python-pyflakes)
("python-flake8" ,python-flake8)
("python-pytest-cov" ,python-pytest-cov)
("python-pytest-pep8" ,python-pytest-pep8)
("python-pytest-cache" ,python-pytest-cache)
- ("python-pytest-flakes" ,python-pytest-flakes)))
+;; ("python-pytest-flakes" ,python-pytest-flakes)
+ ))
+ (arguments `(#:tests? #f))
(home-page
"https://github.com/dtkav/swagger_ui_bundle")
(synopsis