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| author | Efraim Flashner | 2023-03-22 15:36:04 +0200 |
|---|---|---|
| committer | Efraim Flashner | 2023-03-22 15:36:04 +0200 |
| commit | ac4a32b4699321edf0bb232aad89c4b35645c042 (patch) | |
| tree | cb6494e8de0b1f970f30016d03507a04e741effb | |
| parent | 01c7c3152c93de92b954465cd82e197c80a03450 (diff) | |
| download | guix-bioinformatics-ac4a32b4699321edf0bb232aad89c4b35645c042.tar.gz | |
bh20-seq-resource-container.scm updates
| -rw-r--r-- | gn/services/bh20-seq-resource-container.scm | 10 |
1 files changed, 7 insertions, 3 deletions
diff --git a/gn/services/bh20-seq-resource-container.scm b/gn/services/bh20-seq-resource-container.scm index 9eae2fc..e0eccf7 100644 --- a/gn/services/bh20-seq-resource-container.scm +++ b/gn/services/bh20-seq-resource-container.scm @@ -5,6 +5,7 @@ (guix modules) ((guix packages) #:select (package-source)) (guix records) + (guix build-system python) ; for python-version from guix/build/python-build-system.scm (ice-9 match)) (use-service-modules shepherd) (use-package-modules compression python python-web) @@ -58,9 +59,10 @@ #:directory #$deploy-directory #:log-file "/var/log/covid19-pubseq.log" #:environment-variables + ;(let (pyversion (python-version (@ (gnu packages python) python))) '("TMPDIR=/export/tmp" - ;; TODO: Don't hardcode python version! - "PYTHONPATH=/run/current-system/profile/lib/python3.8/site-packages") + "PYTHONPATH=/run/current-system/profile/lib/python3.9/site-packages") + ; (string-append "PYTHONPATH=/run/current-system/profile/lib/python" pyversion "/site-packages"))) ;#:mappings ;(list (file-system-mapping ; (source "/export/tmp") @@ -68,7 +70,7 @@ ; (writable? #t)) ; (file-system-mapping ; ;; TODO: Don't hardcode python version! - ; (source "/run/current-system/profile/lib/python3.8/site-packages") + ; (source "/run/current-system/profile/lib/python3.9/site-packages") ; (target source))) )) (stop #~(make-kill-destructor)))))))) @@ -104,3 +106,5 @@ (packages '()) (services (list (service covid19-pubseq-service-type)))) + +;; guix system container /home/shepherd/guix-bioinformatics/gn/services/bh20-seq-resource-container.scm --share=/export/tmp=/export/tmp --network |