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| author | Efraim Flashner | 2023-09-25 22:03:12 +0300 |
|---|---|---|
| committer | Efraim Flashner | 2023-09-25 22:03:12 +0300 |
| commit | 3eb44711f16cd57ce625ce1011041390c7c270da (patch) | |
| tree | dd6e59556250b37c7bc9cbcfe701747ea301fda4 | |
| parent | 2dfb781a7f9292cc171e4063b0fd746244381566 (diff) | |
| download | guix-bioinformatics-3eb44711f16cd57ce625ce1011041390c7c270da.tar.gz | |
seqwish: Make package tunable.
| -rw-r--r-- | gn/packages/bioinformatics.scm | 21 |
1 files changed, 9 insertions, 12 deletions
diff --git a/gn/packages/bioinformatics.scm b/gn/packages/bioinformatics.scm index afffcd4..285b01d 100644 --- a/gn/packages/bioinformatics.scm +++ b/gn/packages/bioinformatics.scm @@ -1613,7 +1613,8 @@ runApp(launch.browser=0, port=4208)~%\n" (snippet #~(begin (use-modules (guix build utils)) - (substitute* '("deps/atomic_queue/Makefile" + (substitute* '("CMakeLists.txt" + "deps/atomic_queue/Makefile" "deps/mmmulti/deps/DYNAMIC/CMakeLists.txt" "deps/mmmulti/deps/atomic_queue/Makefile" "deps/mmmulti/deps/ips4o/CMakeLists.txt") @@ -1625,17 +1626,12 @@ runApp(launch.browser=0, port=4208)~%\n" (build-system cmake-build-system) (arguments `(#:configure-flags - '(,@(cond ((target-x86-64?) - ;; This seems to be about the minimum - '("-DEXTRA_FLAGS=-march=x86-64-v2")) - ((target-aarch64?) - '("-DEXTRA_FLAGS=-march=armv8-a")) - ((target-riscv64?) - '("-DEXTRA_FLAGS=-march=rv64imafdc")) - ((target-ppc64le?) - '("-DEXTRA_FLAGS=-mcpu=power8")) - ;; The default case is '-march=native' - (else '()))) + '(,@(if (target-x86?) + ;; This is the minimum needed to compile on x86_64, and is a + ;; subset of any other optimizations which might be applied. + '("-DCMAKE_C_FLAGS=-mcx16" + "-DCMAKE_CXX_FLAGS=-mcx16") + '())) #:phases (modify-phases %standard-phases (add-after 'unpack 'link-with-some-shared-libraries @@ -1678,6 +1674,7 @@ large inputs that are commonly encountered when working with large numbers of noisy input sequences. Memory usage during construction and traversal is limited by the use of sorted disk-backed arrays and succinct rank/select dictionaries to record a queryable version of the graph.") + (properties `((tunable? . #t))) (license license:expat))) (define-public smoothxg |