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| author | pjotrp | 2016-09-29 09:02:12 +0000 |
|---|---|---|
| committer | pjotrp | 2016-09-29 09:02:12 +0000 |
| commit | 0faf539f52baea1157da945f1170f890b52bd635 (patch) | |
| tree | 5824119b5fc785991f515d8ee047bb37c83584db | |
| parent | 9351ff09f6ac8c557ce3e847518f04f281e7b3dc (diff) | |
| download | guix-bioinformatics-0faf539f52baea1157da945f1170f890b52bd635.tar.gz | |
qtlreaper: updated to package that checks for out of bound errors
| -rw-r--r-- | gn/packages/genenetwork.scm | 26 |
1 files changed, 13 insertions, 13 deletions
diff --git a/gn/packages/genenetwork.scm b/gn/packages/genenetwork.scm index d8a1813..85c1419 100644 --- a/gn/packages/genenetwork.scm +++ b/gn/packages/genenetwork.scm @@ -88,20 +88,20 @@ (license #f))) (define-public qtlreaper + (let ((commit "cf6f307271e9d958adad1fe1bd03730822555c78")) (package (name "qtlreaper") - (version "1.1.1") - (source - (origin - (method url-fetch) - (uri (string-append - "mirror://sourceforge/qtlreaper/qtlreaper-" version ".tar.gz" - ;; "http://downloads.sourceforge.net/project/qtlreaper/qtlreaper/1.1.1/qtlreaper-1.1.1.tar.gz?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fqtlreaper%2Ffiles%2Flatest%2Fdownload&ts=1358975786&use_mirror=iweb")) - )) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "0rbf030940nbbbkggdq2dxiy3c0jv8l4y3vvyfxhqimgj0qv3l1x")))) + (version (string-append "1.1-gn2" (string-take commit 7) )) + (source (origin + (method git-fetch) + (uri (git-reference + ;; (url "https://github.com/genenetwork/genenetwork2.git") + (url "https://github.com/pjotrp/QTLreaper.git") + (commit commit))) + (file-name (string-append name "-" (string-take commit 7))) + (sha256 + (base32 + "02j0ybzp7rc7n4vingqqssfcrswxg6d3pqysdhjzga3mjwbc0q02")))) (build-system python-build-system) ;; (native-inputs ;; `(("python-setuptools" ,python-setuptools))) @@ -120,7 +120,7 @@ test, it performs only as many permutations as are necessary to define the empirical P-value to a reasonable precision. It also performs bootstrap resampling to estimate the confidence region for the location of a putative QTL.") - (license license:gpl2+))) + (license license:gpl2+)))) (define-public genenetwork1 (let ((commit "d622c803b")) |